Ubuntu
htslib package

htslib 1.10-2 source package in Ubuntu

Changelog

htslib (1.10-2) unstable; urgency=medium

  * Fix check for config.mk.
  * Simplified arch-independent build
  * libhts2 -> libhts3 to match the new SONAME
  * Update the symbols as well

 -- Michael R. Crusoe <email address hidden>  Fri, 13 Dec 2019 11:04:33 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
htslib_1.10-2.dsc 2.3 KiB 45b59cab5d39fe1c0d7b55fcc4bdcf18f7650d446d876f4fb324dd0b5d5696e2
htslib_1.10.orig.tar.bz2 1.2 MiB 7ae44dd9faeb4c4293e9bb4815164ac28c6c6fae81fed4791df2fa878f57a972
htslib_1.10-2.debian.tar.xz 14.4 KiB cfabfd5eef8fda238ffbdd229ad905c071a8e3063142ac57441e74323bdcba22

Available diffs

No changes file available.

Binary packages built by this source

htslib-test: Test data for HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains test files and scripts for the HTSlib.

libhts-dev: development files for the HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains development files for the HTSlib: headers, static
 library, manual pages, etc.

libhts-private-dev: No summary available for libhts-private-dev in ubuntu focal.

No description available for libhts-private-dev in ubuntu focal.

libhts3: C library for high-throughput sequencing data formats

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.

libhts3-dbgsym: debug symbols for libhts3
tabix: generic indexer for TAB-delimited genome position files

 Tabix indexes files where some columns indicate sequence coordinates: name
 (usually a chromosome), start and stop. The input data file must be position
 sorted and compressed by bgzip (provided in this package), which has a gzip
 like interface. After indexing, tabix is able to quickly retrieve data lines by
 chromosomal coordinates. Fast data retrieval also works over network if an URI
 is given as a file name.
 .
 This version of tabix is built from the HTSlib source.

tabix-dbgsym: debug symbols for tabix