htslib 1.7-2 source package in Ubuntu

Changelog

htslib (1.7-2) unstable; urgency=medium

  * Move all needed files into htslib-test package
    Closes: #890303
  * Document how to test the package
  * Update symbols file

 -- Andreas Tille <email address hidden>  Wed, 14 Feb 2018 13:13:18 +0100

Upload details

Uploaded by:
Debian Med on 2018-02-14
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Disco release on 2018-10-30 universe misc
Cosmic release on 2018-05-01 universe misc
Bionic release on 2018-02-14 universe misc

Downloads

File Size SHA-256 Checksum
htslib_1.7-2.dsc 2.3 KiB 5813fc895190a68aec0770cd2932bb4731515e15c5adb33614e158fff448aa66
htslib_1.7.orig.tar.gz 1.1 MiB 08928a81a3e6994815581dfe42506e0689fecca6f9d2b36f5eeef0fdbaea28ca
htslib_1.7-2.debian.tar.xz 13.5 KiB 7a20768d9bff46ccf340ae2febfdffa73af089cc8332d9a9b8fdaa1c92a93884

No changes file available.

Binary packages built by this source

htslib-test: Test data for HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains test files and scripts for the HTSlib.

libhts-dev: development files for the HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains development files for the HTSlib: headers, static
 library, manual pages, etc.

libhts-private-dev: private development files for the HTSlib (use with care)

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains private header files for the HTSlib. They are *not*
 intended for general use but libseqlib needs these files.

libhts2: C library for high-throughput sequencing data formats

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.

libhts2-dbgsym: debug symbols for libhts2
tabix: generic indexer for TAB-delimited genome position files

 Tabix indexes files where some columns indicate sequence coordinates: name
 (usually a chromosome), start and stop. The input data file must be position
 sorted and compressed by bgzip (provided in this package), which has a gzip
 like interface. After indexing, tabix is able to quickly retrieve data lines by
 chromosomal coordinates. Fast data retrieval also works over network if an URI
 is given as a file name.
 .
 This version of tabix is built from the HTSlib source.

tabix-dbgsym: debug symbols for tabix