idba 1.1.3-1 source package in Ubuntu

Changelog

idba (1.1.3-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <email address hidden>  Sat, 06 Aug 2016 00:11:30 +0200

Upload details

Uploaded by:
Debian Med on 2016-08-06
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Zesty release on 2016-10-18 universe misc
Yakkety release on 2016-08-06 universe misc

Downloads

File Size SHA-256 Checksum
idba_1.1.3-1.dsc 1.8 KiB d083d1d0ebf91292c2ed46c5d24ff74c46467d8006bb471d669a2c9a2dd0dd3d
idba_1.1.3.orig.tar.gz 435.8 KiB 030e24463c6d725c1c202baabf773b605b51e310844fd0f27f4688ecfbae26d0
idba_1.1.3-1.debian.tar.xz 4.5 KiB 8443285d20996cf0e7b0c913f6fda9b5c273eedb55cf737c1fbd9eada72311b0

Available diffs

No changes file available.

Binary packages built by this source

idba: iterative De Bruijn Graph De Novo short read assembler for transcriptome

 IDBA-Tran is an iterative De Bruijn Graph De Novo short read assembler
 for transcriptome. It is purely de novo assembler based on only RNA
 sequencing reads. IDBA-Tran uses local assembly to reconstructing
 missing k-mers in low-expressed transcripts and then employs progressive
 cutoff on contigs to separate the graph into components. Each component
 corresponds to one gene in most cases and contains not many transcripts.
 A heuristic algorithm based on pair-end reads is then used to find the
 isoforms.

idba-dbgsym: debug symbols for package idba

 IDBA-Tran is an iterative De Bruijn Graph De Novo short read assembler
 for transcriptome. It is purely de novo assembler based on only RNA
 sequencing reads. IDBA-Tran uses local assembly to reconstructing
 missing k-mers in low-expressed transcripts and then employs progressive
 cutoff on contigs to separate the graph into components. Each component
 corresponds to one gene in most cases and contains not many transcripts.
 A heuristic algorithm based on pair-end reads is then used to find the
 isoforms.