Ubuntu
idba package

idba 1.1.3-8 source package in Ubuntu

Changelog

idba (1.1.3-8) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Fix dh_missingwq

 -- Andreas Tille <email address hidden>  Sat, 05 Nov 2022 21:27:52 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Noble release universe misc
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
idba_1.1.3-8.dsc 2.0 KiB aad99a1f5eef4f6a9789a826fadf213718178735e1946e70e766ec9299680af5
idba_1.1.3.orig.tar.gz 435.8 KiB 030e24463c6d725c1c202baabf773b605b51e310844fd0f27f4688ecfbae26d0
idba_1.1.3-8.debian.tar.xz 257.0 KiB 89c37bdd6d8b98b75c81ff5347bf12b53fdc31b97cbb06021aa742636873daef

Available diffs

No changes file available.

Binary packages built by this source

idba: iterative De Bruijn Graph short read assemblers

 IDBA stands for iterative de Bruijn graph assembler. In computational
 sequence biology, an assembler solves the puzzle coming from large
 sequencing machines that feature many gigabytes of short reads from a
 large genome.
 .
 This package provides several flavours of the IDBA assembler, as they all
 share the same source tree but serve different purposes and evolved over time.
 .
 IDBA is the basic iterative de Bruijn graph assembler for
 second-generation sequencing reads. IDBA-UD, an extension of IDBA,
 is designed to utilize paired-end reads to assemble low-depth regions
 and use progressive depth on contigs to reduce errors in high-depth
 regions. It is a generic purpose assembler and especially good for
 single-cell and metagenomic sequencing data. IDBA-Hybrid is another
 update version of IDBA-UD, which can make use of a similar reference
 genome to improve assembly result. IDBA-Tran is an iterative de Bruijn
 graph assembler for RNA-Seq data.

idba-dbgsym: debug symbols for idba
idba-extra: iterative De Bruijn Graph short read assemblers (extra tools)

 IDBA stands for iterative de Bruijn graph assembler. In computational
 sequence biology, an assembler solves the puzzle coming from large
 sequencing machines that feature many gigabytes of short reads from a
 large genome.
 .
 This package provides several flavours of the IDBA assembler, as they all
 share the same source tree but serve different purposes and evolved over time.
 .
 IDBA is the basic iterative de Bruijn graph assembler for
 second-generation sequencing reads. IDBA-UD, an extension of IDBA,
 is designed to utilize paired-end reads to assemble low-depth regions
 and use progressive depth on contigs to reduce errors in high-depth
 regions. It is a generic purpose assembler and especially good for
 single-cell and metagenomic sequencing data. IDBA-Hybrid is another
 update version of IDBA-UD, which can make use of a similar reference
 genome to improve assembly result. IDBA-Tran is an iterative de Bruijn
 graph assembler for RNA-Seq data.
 .
 This package ships extra tools for using idba in specific situations.

idba-extra-dbgsym: debug symbols for idba-extra