ivar 1.3.1+dfsg-5 source package in Ubuntu
Changelog
ivar (1.3.1+dfsg-5) unstable; urgency=medium * Add gcc-12.patch: fix ftbfs with gcc-12. (Closes: #1012952) * Standards-Version: 4.6.1 (routine-update) * d/s/lintian-overrides: update to new lintian semantics. -- Étienne Mollier <email address hidden> Tue, 12 Jul 2022 23:11:44 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| ivar_1.3.1+dfsg-5.dsc | 2.2 KiB | cad449841d1333dc5b8fff0dab06291b203c06ef8b6c1c76a4f65b0b837c24d6 |
| ivar_1.3.1+dfsg.orig.tar.xz | 615.6 KiB | 1c506993b93b2f6b2fec7328e726bfb91a99a9d36c4b9e0bb174383143a2b192 |
| ivar_1.3.1+dfsg-5.debian.tar.xz | 44.8 KiB | 2ed2fb6a470874428a478be6c817cce3fecb2a78665e3b577037398407272a96 |
Available diffs
- diff from 1.3.1+dfsg-4 to 1.3.1+dfsg-5 (1.1 KiB)
No changes file available.
Binary packages built by this source
- ivar: No summary available for ivar in ubuntu kinetic.
No description available for ivar in ubuntu kinetic.
- ivar-dbgsym: debug symbols for ivar
- ivar-doc: functions broadly useful for viral amplicon-based sequencing (documentation)
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
sequencing are actively being incorporated into iVar. While each of
these functions can be accomplished using existing tools, iVar contains
an intersection of functionality from multiple tools that are required
to call iSNVs and consensus sequences from viral sequencing data across
multiple replicates. iVar provided the following functions:
.
1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
.
This package contains the html documentation for ivar.
