jellyfish 2.2.4-2 source package in Ubuntu
Changelog
jellyfish (2.2.4-2) unstable; urgency=medium
* enable build with c++11 and -Werror=deprecated-declarations compile
flag (thanks for the hint to Gert Wollny)
Closes: #808537
-- Andreas Tille <email address hidden> Fri, 25 Dec 2015 12:17:44 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any-amd64
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Xenial | release | universe | science |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| jellyfish_2.2.4-2.dsc | 2.2 KiB | 30e793109d8e4b3be1e23eedfd9030a4da1b936f945e73d50cd9f93784930184 |
| jellyfish_2.2.4.orig.tar.gz | 643.2 KiB | 44b6478aed63b859b8287d72b4f9bfb5d513fed334efbc8a9e5783da12ecb3ec |
| jellyfish_2.2.4-2.debian.tar.xz | 6.9 KiB | 4acc0ea9e8dd3276e11978a39145817aa20e8bd45b861bdce0bd8236ecbd7abf |
Available diffs
- diff from 2.2.4-1 to 2.2.4-2 (1006 bytes)
No changes file available.
Binary packages built by this source
- jellyfish: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
- jellyfish-dbgsym: debug symbols for package jellyfish
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
- jellyfish-examples: count k-mers in DNA sequences (examples for testing)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains examples to test the package
- jellyfish-examples-dbgsym: No summary available for jellyfish-examples-dbgsym in ubuntu yakkety.
No description available for jellyfish-
examples- dbgsym in ubuntu yakkety.
- libjellyfish-2.0-2: count k-mers in DNA sequences (dynamic library of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the dynamic library the main executable of
jellyfish is linked to.
- libjellyfish-2.0-2-dbgsym: debug symbols for package libjellyfish-2.0-2
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the dynamic library the main executable of
jellyfish is linked to.
- libjellyfish-2.0-dev: No summary available for libjellyfish-2.0-dev in ubuntu yakkety.
No description available for libjellyfish-
2.0-dev in ubuntu yakkety.
