Ubuntu
jellyfish package

jellyfish 2.2.8-3build1 source package in Ubuntu

jellyfish (2.2.8-3build1) bionic; urgency=medium

  * No-change rebuild.

 -- Matthias Klose <email address hidden>  Tue, 10 Apr 2018 20:21:55 +0200

Series	Pocket	Published	Component	Section
Bionic	release	on 2018-04-10	universe	science

File	Size	SHA-256 Checksum
jellyfish_2.2.8.orig.tar.gz	658.8 KiB	bc6539062332ade8a6714535c8bc9aced961e9d5e7053fe07e428180af016005
jellyfish_2.2.8-3build1.debian.tar.xz	11.9 KiB	af9903c00d2baf5b07b772c19371eb1cadebf1f887bd6d51b10d983bb8dcc2c2
jellyfish_2.2.8-3build1.dsc	2.5 KiB	aa450aff0c4b6b7e28da107f229667a9d7d452a8d5aa6cf870b0b99f90d8ebd9

jellyfish: count k-mers in DNA sequences: JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.

jellyfish-dbgsym: No summary available for jellyfish-dbgsym in ubuntu cosmic.: No description available for jellyfish-dbgsym in ubuntu cosmic.

jellyfish-examples: count k-mers in DNA sequences (examples for testing): JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains examples to test the package

jellyfish-examples-dbgsym: No summary available for jellyfish-examples-dbgsym in ubuntu cosmic.: No description available for jellyfish-examples-dbgsym in ubuntu cosmic.

libjellyfish-2.0-2: count k-mers in DNA sequences (dynamic library of jellyfish): JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the dynamic library the main executable of
jellyfish is linked to.

libjellyfish-2.0-dev: count k-mers in DNA sequences (development files of jellyfish): JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the development files (static library and
header files)

libjellyfish-perl: No summary available for libjellyfish-perl in ubuntu cosmic.: No description available for libjellyfish-perl in ubuntu cosmic.

python3-dna-jellyfish: count k-mers in DNA sequences (Python bindings of jellyfish): JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the Python bindings of jellyfish.