Ubuntu
kmer package

kmer 0~20150903+r2013-6 source package in Ubuntu

Changelog

kmer (0~20150903+r2013-6) unstable; urgency=medium

  * Team upload.

  [ Liubov Chuprikova ]
  * Add autopkgtest.
  * Standards-Version: 4.2.1
  * Add a patch to fix wrong evaluation order in an expression
    Closes: #906980

  [ Andreas Tille ]
  * Provide test data in new package kmer-examples to avoid duplication of
    data in two packages

 -- Liubov Chuprikova <email address hidden>  Mon, 27 Aug 2018 11:37:43 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

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File Size SHA-256 Checksum
kmer_0~20150903+r2013-6.dsc 2.3 KiB 99bccbe8c57b344f3df894700c8c96f1dfd2af73be553ff36a760d1022715cae
kmer_0~20150903+r2013.orig.tar.gz 1.2 MiB 8fd9c289244e69e38bb7709f3523d39edf1c2ced2cbcc687fcf00ecfca78ea47
kmer_0~20150903+r2013-6.debian.tar.xz 2.3 MiB f75ba675b36a8d91308f3d356b474fdcf62e7c9598f48eaf857d65a86f49d6f2

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Binary packages built by this source

atac: No summary available for atac in ubuntu eoan.

No description available for atac in ubuntu eoan.

atac-dbgsym: debug symbols for atac
kmer: No summary available for kmer in ubuntu eoan.

No description available for kmer in ubuntu eoan.

kmer-examples: No summary available for kmer-examples in ubuntu eoan.

No description available for kmer-examples in ubuntu eoan.

leaff: No summary available for leaff in ubuntu disco.

No description available for leaff in ubuntu disco.

leaff-dbgsym: No summary available for leaff-dbgsym in ubuntu eoan.

No description available for leaff-dbgsym in ubuntu eoan.

libkmer-dev: suite of tools for DNA sequence analysis (development lib)

 The kmer package is a suite of tools for DNA sequence analysis.
 It provides tools for searching (ESTs, mRNAs, sequencing reads);
 aligning (ESTs, mRNAs, whole genomes); and a variety of analyses
 based on kmers.
 .
 This package contains headers and static libraries for kmer.

libmeryl-dev: No summary available for libmeryl-dev in ubuntu eoan.

No description available for libmeryl-dev in ubuntu eoan.

meryl: No summary available for meryl in ubuntu disco.

No description available for meryl in ubuntu disco.

meryl-dbgsym: No summary available for meryl-dbgsym in ubuntu eoan.

No description available for meryl-dbgsym in ubuntu eoan.

sim4db: batch spliced alignment of cDNA sequences to a target genome

 Sim4db performs fast batch alignment of large cDNA (EST, mRNA) sequence
 sets to a set of eukaryotic genomic regions. It uses the sim4 and sim4cc
 algorithms to determine the alignments, but incorporates a fast sequence
 indexing and retrieval mechanism, implemented in the sister package
 'leaff', to speedily process large volumes of sequences.
 .
 While sim4db produces alignments in the same way as sim4 or sim4cc, it
 has additional features to make it more amenable for use with whole-genome
 annotation pipelines. A script file can be used to group pairings between
 cDNAs and their corresponding genomic regions, to be aligned as one run
 and using the same set of parameters. Sim4db also optionally reports more
 than one alignment for the same cDNA within a genomic region, as long
 as they meet user-defined criteria such as minimum length, percentage
 sequence identity or coverage. This feature is instrumental in finding
 all alignments of a gene family at one locus. Lastly, the output is
 presented either as custom sim4db alignments or as GFF3 gene features.
 .
 This package is part of the Kmer suite.

sim4db-dbgsym: debug symbols for sim4db