Ubuntu
kraken package

kraken 1.1.1-4 source package in Ubuntu

Changelog

kraken (1.1.1-4) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)
  * lintian-overrides (see lintian bug #1017966)

 -- Andreas Tille <email address hidden>  Sat, 05 Nov 2022 21:58:35 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Noble release universe misc
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
kraken_1.1.1-4.dsc 1.9 KiB 7f3dce3bf852bd81ed82482e8277f8ea52a0ab5dd4bc958256bfc7688892f9e3
kraken_1.1.1.orig.tar.gz 74.7 KiB 73e48f40418f92b8cf036ca1da727ca3941da9b78d4c285b81ba3267326ac4ee
kraken_1.1.1-4.debian.tar.xz 329.3 KiB b3adb7c91b18d79310d4610d15df87c875ad4a5ec0db7ef90fa7072f7fb0f00e

Available diffs

No changes file available.

Binary packages built by this source

kraken: assigning taxonomic labels to short DNA sequences

 Kraken is a system for assigning taxonomic labels to short DNA
 sequences, usually obtained through metagenomic studies. Previous
 attempts by other bioinformatics software to accomplish this task have
 often used sequence alignment or machine learning techniques that were
 quite slow, leading to the development of less sensitive but much faster
 abundance estimation programs. Kraken aims to achieve high sensitivity
 and high speed by utilizing exact alignments of k-mers and a novel
 classification algorithm.
 .
 In its fastest mode of operation, for a simulated metagenome of 100 bp
 reads, Kraken processed over 4 million reads per minute on a single
 core, over 900 times faster than Megablast and over 11 times faster than
 the abundance estimation program MetaPhlAn. Kraken's accuracy is
 comparable with Megablast, with slightly lower sensitivity and very high
 precision.

kraken-dbgsym: debug symbols for kraken