libfastahack 0.0+20160702-1 source package in Ubuntu
Changelog
libfastahack (0.0+20160702-1) unstable; urgency=medium * Initial release (Closes: #827978) -- Andreas Tille <email address hidden> Tue, 05 Jul 2016 15:25:05 +0200
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- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Bionic | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| libfastahack_0.0+20160702-1.dsc | 2.1 KiB | c2ea3f0c8f2c71ab5a578e52da4ba8c461837cfc95388743d366c5be3cede9da |
| libfastahack_0.0+20160702.orig.tar.xz | 8.6 KiB | d722fbb6bcbfbf556cb8584aac6c8dd457ad4807965495dfad7bc8abf4d49804 |
| libfastahack_0.0+20160702-1.debian.tar.xz | 4.8 KiB | 7351376d1d899f87076bc346f8095e032e59a6e140ec154f895787d1e330c0b5 |
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Binary packages built by this source
- fastahack: No summary available for fastahack in ubuntu cosmic.
No description available for fastahack in ubuntu cosmic.
- fastahack-dbgsym: No summary available for fastahack-dbgsym in ubuntu yakkety.
No description available for fastahack-dbgsym in ubuntu yakkety.
- libfastahack-dev: No summary available for libfastahack-dev in ubuntu zesty.
No description available for libfastahack-dev in ubuntu zesty.
- libfastahack0: No summary available for libfastahack0 in ubuntu zesty.
No description available for libfastahack0 in ubuntu zesty.
- libfastahack0-dbgsym: debug symbols for package libfastahack0
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
.
This package contains the dynamic library.
