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libfastahack package

libfastahack 1.0.0+dfsg-4 source package in Ubuntu

Changelog

libfastahack (1.0.0+dfsg-4) unstable; urgency=medium

  * Team upload.
  * Generate a manual page with help2man
  * Run some basic tests
  * Use those tests as an autopkgtest

 -- Michael R. Crusoe <email address hidden>  Wed, 08 Jan 2020 10:55:37 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

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Downloads

File Size SHA-256 Checksum
libfastahack_1.0.0+dfsg-4.dsc 2.1 KiB cbffadfa75d045bba16b5946a952f1c7eb94b389b84cb55e0e44f6285a171542
libfastahack_1.0.0+dfsg.orig.tar.xz 8.9 KiB 41e512b34158564ae83355a1e11a5ae366f3ca9ac4a31ef80f3f26f3438a91af
libfastahack_1.0.0+dfsg-4.debian.tar.xz 6.7 KiB a6b7d81544c206df6ad041403c94a9794f3daa55c61b4a85ba94fd67419098c5

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Binary packages built by this source

fastahack: utility for indexing and sequence extraction from FASTA files

 fastahack is a small application for indexing and extracting sequences and
 subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
 reader and indexer that can be embedded into applications which would benefit
 from directly reading subsequences from FASTA files. The library automatically
 handles index file generation and use.
 .
 Features:
  * FASTA index (.fai) generation for FASTA files
  * Sequence extraction
  * Subsequence extraction
  * Sequence statistics (currently only entropy is provided)
 .
 Sequence and subsequence extraction use fseek64 to provide fastest-possible
 extraction without RAM-intensive file loading operations. This makes fastahack
 a useful tool for bioinformaticists who need to quickly extract many
 subsequences from a reference FASTA sequence.

fastahack-dbgsym: debug symbols for fastahack
libfastahack-dev: library for indexing and sequence extraction from FASTA files (devel)

 fastahack is a small application for indexing and extracting sequences and
 subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
 reader and indexer that can be embedded into applications which would benefit
 from directly reading subsequences from FASTA files. The library automatically
 handles index file generation and use.
 .
 Features:
  * FASTA index (.fai) generation for FASTA files
  * Sequence extraction
  * Subsequence extraction
  * Sequence statistics (currently only entropy is provided)
 .
 Sequence and subsequence extraction use fseek64 to provide fastest-possible
 extraction without RAM-intensive file loading operations. This makes fastahack
 a useful tool for bioinformaticists who need to quickly extract many
 subsequences from a reference FASTA sequence.
 .
 This is the development package containing the statically linked
 library and the header files.

libfastahack0: library for indexing and sequence extraction from FASTA files (lib)

 fastahack is a small application for indexing and extracting sequences and
 subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
 reader and indexer that can be embedded into applications which would benefit
 from directly reading subsequences from FASTA files. The library automatically
 handles index file generation and use.
 .
 Features:
  * FASTA index (.fai) generation for FASTA files
  * Sequence extraction
  * Subsequence extraction
  * Sequence statistics (currently only entropy is provided)
 .
 Sequence and subsequence extraction use fseek64 to provide fastest-possible
 extraction without RAM-intensive file loading operations. This makes fastahack
 a useful tool for bioinformaticists who need to quickly extract many
 subsequences from a reference FASTA sequence.
 .
 This package contains the dynamic library.

libfastahack0-dbgsym: debug symbols for libfastahack0