Ubuntu
libsbml package

Change log for libsbml package in Ubuntu

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Published in oracular-proposed 
libsbml (5.20.2+dfsg-7) unstable; urgency=medium

  * Team upload.
  * d/rules: correct test skipping logic for i386.

 -- Michael R. Crusoe <email address hidden>  Sat, 04 May 2024 07:55:25 +0200

Available diffs

Superseded in oracular-proposed 
libsbml (5.20.2+dfsg-6) unstable; urgency=medium

  * Team upload.
  * d/rules: skip tests on i386 due to "test_perl_binding" failing.

 -- Michael R. Crusoe <email address hidden>  Fri, 03 May 2024 16:23:53 +0200

Available diffs

Superseded in oracular-proposed 
libsbml (5.20.2+dfsg-5) unstable; urgency=medium

  * Team upload.
  * d/rules: Fix the "any" build.
  * Expand list of non-mono archs, simplify test for C# support.
  * d/rules: only run dh_octave_substvar for the libsbml5-octave
    package.
  * d/control: drop unused latex build-deps
  * d/rules: disable parallel building for now.

 -- Michael R. Crusoe <email address hidden>  Tue, 30 Apr 2024 12:28:07 +0200
Published in oracular-release
Published in noble-release
Deleted in noble-proposed (Reason: Moved to noble) 
libsbml (5.20.2+dfsg-3) unstable; urgency=medium

  * Drop the Python3-Version attribute
    Closes: #1068105
  * Fix doc-base file

 -- Andreas Tille <email address hidden>  Sat, 30 Mar 2024 21:36:28 +0100
Superseded in noble-proposed 
libsbml (5.20.2+dfsg-2.1build5) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- Steve Langasek <email address hidden>  Sun, 31 Mar 2024 02:15:50 +0000
Superseded in noble-proposed 
libsbml (5.20.2+dfsg-2.1build4) noble; urgency=medium

  * No-change rebuild to build with python3.12 only.

 -- Matthias Klose <email address hidden>  Fri, 29 Mar 2024 15:34:49 +0100
Superseded in noble-release
Deleted in noble-proposed (Reason: Moved to noble) 
libsbml (5.20.2+dfsg-2.1build3) noble; urgency=medium

  * No-change rebuild to build with python3.12 only.

 -- Matthias Klose <email address hidden>  Sat, 16 Mar 2024 23:17:26 +0100
Superseded in noble-proposed 
libsbml (5.20.2+dfsg-2.1build2) noble; urgency=medium

  * No-change rebuild against libperl5.38t64

 -- Steve Langasek <email address hidden>  Sat, 09 Mar 2024 18:21:16 +0000
Superseded in noble-proposed 
libsbml (5.20.2+dfsg-2.1build1) noble; urgency=medium

  * No-change rebuild for python3.12 t64.

 -- Matthias Klose <email address hidden>  Sat, 02 Mar 2024 21:18:09 +0100
Superseded in noble-proposed 
libsbml (5.20.2+dfsg-2.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Rename libraries for 64-bit time_t transition.  Closes: #1062619

 -- Benjamin Drung <email address hidden>  Wed, 28 Feb 2024 18:43:04 +0000
Deleted in noble-updates (Reason: superseded by release)
Superseded in noble-release
Deleted in noble-proposed (Reason: Moved to noble)
Deleted in noble-proposed (Reason: Temporary rollback to disentangle perl and python transit...) 
libsbml (5.20.2+dfsg-2build2) noble; urgency=medium

  * No-change rebuild with Python 3.12 as default

 -- Graham Inggs <email address hidden>  Sat, 20 Jan 2024 08:51:15 +0000
Superseded in noble-release
Deleted in noble-proposed (Reason: Moved to noble)
Superseded in noble-proposed 
libsbml (5.20.2+dfsg-2build1) noble; urgency=medium

  * No-change rebuild for the perl update.

 -- Matthias Klose <email address hidden>  Thu, 11 Jan 2024 03:51:53 +0100
Superseded in noble-release
Deleted in noble-proposed (Reason: Moved to noble) 
libsbml (5.20.2+dfsg-2) unstable; urgency=medium

  * Team upload.
  * d/control: X-Python3-Version: 3.11 (==)
    While this change is not ideal, because of the upcoming necessary
    upload to bring python3.12 support when it becomes the default, it is
    a short term fix to move the python3.12 migration forward.
    (Closes: #1059650)

 -- Étienne Mollier <email address hidden>  Sun, 31 Dec 2023 15:03:26 +0100

Available diffs

Superseded in noble-release
Deleted in noble-proposed (Reason: Moved to noble) 
libsbml (5.20.2+dfsg-1) unstable; urgency=medium

  * New upstream version
  * add build support for loongarch64
    Closes: #1058906
  * Drop ancient X-Python-Version field (routine-update)
  * Update location of docs in dh_installdocs helpers
  * Use Debian packaged mathjax.js

 -- Andreas Tille <email address hidden>  Mon, 18 Dec 2023 14:31:08 +0100

Available diffs

Superseded in noble-release
Published in mantic-release
Published in lunar-release
Deleted in lunar-proposed (Reason: Moved to lunar) 
libsbml (5.19.7+dfsg-2) unstable; urgency=medium

  * Team upload.
  * d/control: bump preferred python3 version to 3.11. (Closes: #1028993)
  * d/control: declare compliance to standards version 4.6.2.

 -- Étienne Mollier <email address hidden>  Mon, 16 Jan 2023 21:48:17 +0100
Superseded in lunar-proposed 
libsbml (5.19.7+dfsg-1build1) lunar; urgency=medium

  * No-change rebuild with Python 3.11 as default

 -- Graham Inggs <email address hidden>  Mon, 26 Dec 2022 09:55:50 +0000
Superseded in lunar-release
Deleted in lunar-proposed (Reason: Moved to lunar) 
libsbml (5.19.7+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Upstream moved to Github
  * New upstream version
  * Install octave tests and cmake files
  * Remove Windows related file from upstream source
  * Just provide default Python3 version support since upstream
    does not support more than one Python3 version and adjust
    python3-sbml5.install
  * lintian-overrides (see lintian bug #1017966)
  * X-Python3-Version: 3.10

  [ Pierre Gruet ]
  * Fixing a wrong import in AutoTestRunner.java
  * Fixing a missing import in the matlab bindings

  [ Étienne Mollier ]
  * d/t/autopkgtest-pkg-python.conf: invoke module as "libsbml".
  * d/control: enable testsuite autopkgtest-pkg-python.

 -- Andreas Tille <email address hidden>  Fri, 02 Dec 2022 10:53:13 +0100
Superseded in lunar-proposed 
libsbml (5.19.0+dfsg-1ubuntu3) lunar; urgency=medium

  * Rebuild against new perlapi-5.36.

 -- Gianfranco Costamagna <email address hidden>  Fri, 04 Nov 2022 21:34:45 +0100
Superseded in lunar-proposed 
libsbml (5.19.0+dfsg-3) unstable; urgency=medium

  * Team upload.
  * Setting javac source/target level to 7 to be able to build with OpenJDK 17
    (Closes: #1011157)
  * Standards-Version: 4.6.1 (routine-update)
  * Set upstream metadata fields: Archive, Repository.

 -- Pierre Gruet <email address hidden>  Sun, 29 May 2022 20:33:42 +0200
Superseded in lunar-release
Obsolete in kinetic-release
Published in jammy-release
Deleted in jammy-proposed (Reason: Moved to jammy) 
libsbml (5.19.0+dfsg-1ubuntu2) jammy; urgency=medium

  * No-change rebuild for the perl update.

 -- Matthias Klose <email address hidden>  Mon, 07 Feb 2022 07:57:34 +0100
Superseded in jammy-proposed 
libsbml (5.19.0+dfsg-1ubuntu1) jammy; urgency=medium

  * Cherry-pick upstream commit for Python 3.10 compatibility

 -- Graham Inggs <email address hidden>  Wed, 02 Feb 2022 08:06:05 +0000
Superseded in jammy-proposed 
libsbml (5.19.0+dfsg-1build1) jammy; urgency=medium

  * No-change rebuild with Python 3.10 as default version

 -- Graham Inggs <email address hidden>  Fri, 14 Jan 2022 11:33:27 +0000
Superseded in jammy-release
Obsolete in impish-release
Obsolete in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
libsbml (5.19.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.5.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Update renamed lintian tag names in lintian overrides.
  * Install cmake and pkgconfig files
  * Enable dh_missing --fail-missing

 -- Andreas Tille <email address hidden>  Tue, 19 Jan 2021 19:34:01 +0100
Superseded in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
libsbml (5.18.0+dfsg-2build2) hirsute; urgency=medium

  * No-change rebuild to build with python3.9 as default.

 -- Matthias Klose <email address hidden>  Thu, 19 Nov 2020 20:19:19 +0100
Superseded in hirsute-proposed 
libsbml (5.18.0+dfsg-2build1) hirsute; urgency=medium

  * No-change rebuild for the perl update.

 -- Matthias Klose <email address hidden>  Mon, 09 Nov 2020 12:53:10 +0100
Superseded in groovy-release
Published in focal-release
Deleted in focal-proposed (Reason: moved to Release) 
libsbml (5.18.0+dfsg-1build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Tue, 24 Mar 2020 15:06:46 +0100
Superseded in hirsute-release
Obsolete in groovy-release
Deleted in groovy-proposed (Reason: moved to Release) 
libsbml (5.18.0+dfsg-2) unstable; urgency=medium

  * Do not attempt to build on several architectures
    Closes: #953584
  * Add salsa-ci file (routine-update)

 -- Andreas Tille <email address hidden>  Wed, 11 Mar 2020 09:53:46 +0100
Superseded in focal-release
Deleted in focal-proposed (Reason: moved to Release) 
libsbml (5.18.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 12 (routine-update)
  * Remove obsolete fields Contact, Name from debian/upstream/metadata
    (already present in machine-readable debian/copyright).
  * Build-Depends: dh-python
    Closes: #949195
  * Fix installation path of Python modules
    Closes: #922486
  * Enforce Python3 interpreter in examples

 -- Andreas Tille <email address hidden>  Thu, 30 Jan 2020 19:10:49 +0100
Superseded in focal-release
Deleted in focal-proposed (Reason: moved to Release) 
libsbml (5.17.2+dfsg-3ubuntu1) focal; urgency=medium

  * Build-depend on dh-python.

 -- Matthias Klose <email address hidden>  Tue, 28 Jan 2020 08:03:09 +0100
Superseded in focal-proposed 
libsbml (5.17.2+dfsg-3build3) focal; urgency=medium

  * No-change rebuild to build with python3.8.

 -- Matthias Klose <email address hidden>  Sat, 25 Jan 2020 05:42:10 +0000
Superseded in focal-release
Deleted in focal-proposed (Reason: moved to Release) 
libsbml (5.17.2+dfsg-3build2) focal; urgency=medium

  * Rebuild against new liboctave7.

 -- Gianfranco Costamagna <email address hidden>  Sat, 02 Nov 2019 20:36:56 +0100
Superseded in focal-release
Deleted in focal-proposed (Reason: moved to Release) 
libsbml (5.17.2+dfsg-3build1) focal; urgency=medium

  * No-change rebuild for the perl update.

 -- Matthias Klose <email address hidden>  Fri, 18 Oct 2019 19:34:35 +0000
Superseded in focal-release
Obsolete in eoan-release
Obsolete in disco-release
Deleted in disco-proposed (Reason: moved to release) 
libsbml (5.17.2+dfsg-3) unstable; urgency=medium

  * Fix link in development package
    Closes: #920849

 -- Andreas Tille <email address hidden>  Wed, 30 Jan 2019 19:17:03 +0100

Available diffs

Superseded in disco-release
Deleted in disco-proposed (Reason: moved to release) 
libsbml (5.17.2+dfsg-2) unstable; urgency=medium

  * Team upload.

  [ Andreas Tille ]
  * Add missing Breaks+Replaces: libsbml5-python-doc
    Closes: #919794

  [ Michael R. Crusoe ]
  * Fix build for multiarch cross building (specifically i386 on amd64)
  * Link to jquery and other assets from the default-jdk-doc
  * Slim build-deps (637 → 595) use jdk-headless

 -- Michael R. Crusoe <email address hidden>  Sat, 19 Jan 2019 23:39:33 -0800

Available diffs

Superseded in disco-release
Deleted in disco-proposed (Reason: moved to release) 
libsbml (5.17.2+dfsg-1) unstable; urgency=medium

  [ gregor herrmann ]
  * Fix Perl installdir
    Closes: #896531

  [ Andreas Tille ]
  * New upstream version
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.3.0
  * debhelper 12
  * Deal with issue in doclets by removing docs/src/SBMLDoclet.java
  * Remove libsbml-java-doc since doc does not build properly
    Closes: #901455, #911482
  * Provide Python3 instead of Python2 bindings (SBML can only provide
    either Python2 or Python3 - lets do the switch now)
    Closes: #847013
  * Secure URI in copyright format
  * Drop useless get-orig-source target
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Remove trailing whitespace in debian/changelog
  * Do not parse d/changelog
  * Build-Depends: libnewlib-dev, check
  * Remove Matlab related options from debian/cmake_opts (thanks for the
    hint to Nicolas Mora)
  * WITH_R=off (we do not build an R package and something is wrong with
    the R build)
  * Do not provide Java doc since there are errors when creating it
    and this solution was suggested by the Debian Java team
  * Fix Perl interpreter path
  * d/copyright: examples have MIT license

 -- Andreas Tille <email address hidden>  Thu, 17 Jan 2019 12:12:21 +0100
Deleted in disco-proposed (Reason: FTBFS; LP: #1788246, Debian bug #901455)
Deleted in cosmic-proposed (Reason: Moved to disco-proposed) 
libsbml (5.16.0+dfsg-2build1) cosmic; urgency=medium

  * No-change rebuild against octave 4.4

 -- Graham Inggs <email address hidden>  Mon, 09 Jul 2018 18:34:18 +0000
Superseded in cosmic-proposed 
libsbml (5.16.0+dfsg-2) unstable; urgency=medium

  * Work around javadoc issue with Java 9
    Closes: #893298

 -- Andreas Tille <email address hidden>  Sun, 18 Mar 2018 19:49:01 +0100
Deleted in cosmic-release (Reason: LP: #1788246: remove libsbml (ftbfs), and demote rdeps)
Published in bionic-release
Deleted in bionic-proposed (Reason: moved to release) 
libsbml (5.16.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Build-depend on dh-octave instead of octave-pkg-dev (Thanks for the patch
    to Rafael Laboissière <email address hidden>)
    Closes: #890089
  * Standards-Version: 4.1.3
  * debhelper 11
  * Adapt docbase files
  * Remove unused lintian override

 -- Andreas Tille <email address hidden>  Sun, 11 Feb 2018 22:54:57 +0100

Available diffs

Superseded in bionic-release
Obsolete in artful-release
Deleted in artful-proposed (Reason: moved to release) 
libsbml (5.15.2+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.0.0 (no changes needed)
  * Removed debian/libsbml5.triggers since now trigger is properly set
    by dh_makeshlibs/10.7.2
  * Rebuild with gcc7
    Closes: #871291

 -- Andreas Tille <email address hidden>  Tue, 08 Aug 2017 04:50:29 +0200
Superseded in artful-proposed 
libsbml (5.13.0+dfsg-1.1~build2) artful; urgency=medium

  * No-change rebuild for perl 5.26.0.

 -- Matthias Klose <email address hidden>  Wed, 26 Jul 2017 20:09:10 +0000
Superseded in artful-release
Deleted in artful-proposed (Reason: moved to release) 
libsbml (5.13.0+dfsg-1.1~build1) artful; urgency=medium

  * No change upload to make it syncable on next debian upload

 -- Gianfranco Costamagna <email address hidden>  Sat, 01 Jul 2017 16:36:07 +0200
Superseded in artful-release
Deleted in artful-proposed (Reason: moved to release) 
libsbml (5.13.0+dfsg-1ubuntu3) artful; urgency=medium

  * No-change rebuild against liboctave4

 -- Steve Langasek <email address hidden>  Mon, 26 Jun 2017 03:51:46 +0000
Superseded in artful-release
Deleted in artful-proposed (Reason: moved to release) 
libsbml (5.13.0+dfsg-1ubuntu2) artful; urgency=medium

  * Revert PIE changes for new dpkg

 -- Graham Inggs <email address hidden>  Thu, 27 Apr 2017 18:44:03 +0200
Superseded in artful-release
Obsolete in zesty-release
Deleted in zesty-proposed (Reason: moved to release) 
libsbml (5.13.0+dfsg-1ubuntu1) zesty; urgency=medium

  * Do not force PIE hardening to avoid FTBFS on amd64

 -- Graham Inggs <email address hidden>  Wed, 12 Apr 2017 10:33:18 +0200
Superseded in zesty-proposed 
libsbml (5.13.0+dfsg-1) unstable; urgency=medium

  * New upstream version
    Closes: #848021

  [ Afif Elghraoui ]
  * Drop explicit dbg packagas
  * Register changelog with dh_installchangelogs

  [ Andreas Tille ]
  * d/watch:
     - xz compression for repackaged upstream source
     - version=4
  * cme fix dpkg-control
  * hardening=+all
  * Use triggers instead of explicit ldconfig calls
  * debhelper 10
  * Proper dealing with lintian-overrides

 -- Andreas Tille <email address hidden>  Thu, 15 Dec 2016 08:17:15 +0100
Superseded in zesty-release
Deleted in zesty-proposed (Reason: moved to release) 
libsbml (5.12.0+dfsg-3build2) zesty; urgency=medium

  * No-change rebuild for perl 5.24 transition

 -- Iain Lane <email address hidden>  Mon, 24 Oct 2016 10:28:08 +0100
Superseded in zesty-release
Obsolete in yakkety-release
Deleted in yakkety-proposed (Reason: moved to release) 
libsbml (5.12.0+dfsg-3build1) yakkety; urgency=medium

  * No-change rebuild against liboctave3v5

 -- Steve Langasek <email address hidden>  Wed, 08 Jun 2016 18:43:40 +0000
Superseded in yakkety-release
Published in xenial-release
Deleted in xenial-proposed (Reason: moved to release) 
libsbml (5.12.0+dfsg-3) unstable; urgency=medium

  * Build-Depend from default-jdk instead a specific version
    Closes: #814166

 -- Andreas Tille <email address hidden>  Tue, 09 Feb 2016 11:28:36 +0100

Available diffs

Superseded in xenial-release
Deleted in xenial-proposed (Reason: moved to release) 
libsbml (5.12.0+dfsg-2) unstable; urgency=medium

  * follow Debian CLI library packaging guidelines (add missing dependencies)
    Closes: #808477
  * add debian/libsbmlcsP.dll.config following a hint of Jo Shields in the
    log of bug #808477

 -- Andreas Tille <email address hidden>  Sun, 20 Dec 2015 21:28:59 +0100
Superseded in xenial-proposed 
libsbml (5.10.0+dfsg-1ubuntu2) xenial; urgency=medium

  * Rebuild for Perl 5.22.1.

 -- Colin Watson <email address hidden>  Fri, 18 Dec 2015 11:34:17 +0000
Superseded in xenial-proposed 
libsbml (5.10.0+dfsg-1ubuntu1) xenial; urgency=medium

  * Fully qualify IntPtr, HandleRef, and DllImport to fix FTBFS with Swig 3.x.

 -- Logan Rosen <email address hidden>  Tue, 17 Nov 2015 16:42:56 -0500
Superseded in xenial-proposed 
libsbml (5.10.0+dfsg-1) unstable; urgency=medium


  [Ivo Maintz]
  * debian/cmake_opts: enabled the qual extension
  * debian/rules: added "--download-current-version" in get-orig-source target
    added some more magic to the clean target for proper handling of xz archives
    removed the full delete/unpack part from clean, instead using rm and
    debian/source/options
  * debian/copyright: the path to prettify.js had changed
    added macosx to Files-Excluded
  * debian/watch: changed the name of the source from the bare "core" package
    to the full source pack, containing some more extensions.
  * debian/*links: updated some links to the version of libsbml
  * debian/patches/perl-installdirs.patch added and debian/libsbml5-perl.install
    (thanks to gregor herrmann <email address hidden> for this solution)

  [ Andreas Tille ]
  * New upstream version
  * debian/upstream -> debian/upstream/metadata
  * debian/control: Drop explicite ruby version in Build-Dependencies
  * debian/copyright: Files-Excluded: prettify.js (Javascript without source)
  * debian/rules: Enable gz and xz archives in clean target
  * rebuild with latest libperl
    Closes: #761134

 -- Ivo Maintz <email address hidden>  Mon, 25 Aug 2014 14:16:04 +0200
Deleted in trusty-release (Reason: lp: #1303358, blocking the ruby1.8 removal)
Deleted in trusty-proposed (Reason: moved to release) 
libsbml (5.8.0-2build1) trusty; urgency=medium

  * Rebuild for octave 3.8.
 -- Matthias Klose <email address hidden>   Mon, 24 Feb 2014 18:25:55 +0000
Superseded in trusty-release
Deleted in trusty-proposed (Reason: moved to release) 
libsbml (5.8.0-2) unstable; urgency=low


  * Put *.m files in the Octave path (thanks for the patch to
    Rafael Laboissiere <email address hidden>)
    Closes: #734048

 -- Andreas Tille <email address hidden>  Sat, 04 Jan 2014 00:53:15 +0100

Available diffs

Superseded in trusty-release
Deleted in trusty-proposed (Reason: moved to release) 
libsbml (5.8.0-1) unstable; urgency=low


  [ Ivo Maintz ]
  * update from upstream
  * switched to cmake for configure (following upstream)
  * added a patch to use correct matlab extensions in chrooted environments
  * (re)added doc packages for libsbml5, libsbml5-cil, libsbml5-java,
    libsbml5-python and libsbml5-perl
  * debian/*postinst and debian/*postrm:
    fixed to work on upgrade/downgrade too

  [ Andreas Tille ]
  * debian/control:
     - added libsbml5-dev to libsbml5-cli dependency
       Closes: #715111
     - cme fix dpkg-control
     - canonical Vcs fields
  * debian/patches/format-security.patch:
    Enable compiling with -Werror=format-security
  * debian/libsbml5-perl.install: Do not try to install not existing
    override

 -- Andreas Tille <email address hidden>  Mon, 23 Dec 2013 21:32:47 +0100
Superseded in trusty-release
Deleted in trusty-proposed (Reason: moved to release) 
libsbml (5.6.0-1build1) trusty; urgency=low

  * Rebuild for Perl 5.18.
 -- Colin Watson <email address hidden>   Tue, 22 Oct 2013 10:28:33 +0100
Superseded in trusty-release
Obsolete in saucy-release
Obsolete in raring-release
Deleted in raring-proposed (Reason: moved to release) 
libsbml (5.6.0-1) unstable; urgency=low


  [ Ivo Maintz ]
  * update from upstream
  * configured now with --enable-cpp-namespace

 -- Ivo Maintz <email address hidden>  Thu, 06 Sep 2012 09:21:33 +0200

Available diffs

Superseded in raring-release
Obsolete in quantal-release 
libsbml (5.4.1-3) unstable; urgency=low


  * debian/control: removed dependency on swig2.0 (Closes: #667652)
    thanks to Peter Green for the hint.
  * debian/control: added myself to uploaders

 -- Thorsten Alteholz <email address hidden>  Thu, 05 Apr 2012 18:44:30 +0200
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