Ubuntu
libseqlib package

libseqlib 1.1.1+dfsg-4 source package in Ubuntu

Changelog

libseqlib (1.1.1+dfsg-4) unstable; urgency=medium

  * Make sure also private headers of htslib will be installed and usable
    since these are used in libseqlib-dev
    Closes: #891745
  * Standards-Version: 4.1.3
  * debhelper 11

 -- Andreas Tille <email address hidden>  Mon, 05 Mar 2018 16:25:15 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
libseqlib_1.1.1+dfsg-4.dsc 2.2 KiB 52319d758d0705329415b78de55c330f5175996bd3d624f4b80c2ff23033ba2b
libseqlib_1.1.1+dfsg.orig.tar.xz 159.1 KiB 7c9a95a3ecb093e5eac5490d771871565f69bbfc50f62d3fe6d3802878753bd6
libseqlib_1.1.1+dfsg-4.debian.tar.xz 6.7 KiB aeca14958020c549549f6f6c2e23495b178ee9c157f08071ca6d3b2bfadcafac

Available diffs

No changes file available.

Binary packages built by this source

libseqlib-dev: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.
 .
 This package contains the header files and static library.

libseqlib0: C++ htslib/bwa-mem/fermi interface for interrogating sequence data

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.

libseqlib0-dbgsym: debug symbols for libseqlib0