Ubuntu
libseqlib package

libseqlib 1.1.1+dfsg-4ubuntu1 source package in Ubuntu

Changelog

libseqlib (1.1.1+dfsg-4ubuntu1) bionic; urgency=medium

  * debian/patches/pkg-config.patch: Add -lz to Libs, as we link with it.

 -- Adam Conrad <email address hidden>  Sat, 17 Mar 2018 02:25:49 -0600

Upload details

Uploaded by:
Adam Conrad
Uploaded to:
Bionic
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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Series Pocket Published Component Section

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File Size SHA-256 Checksum
libseqlib_1.1.1+dfsg.orig.tar.xz 159.1 KiB 7c9a95a3ecb093e5eac5490d771871565f69bbfc50f62d3fe6d3802878753bd6
libseqlib_1.1.1+dfsg-4ubuntu1.debian.tar.xz 6.9 KiB 4523cff75d700346bc9feadf90941737822aa7daf42216c97dc5b9ced7809551
libseqlib_1.1.1+dfsg-4ubuntu1.dsc 2.3 KiB 955d53e8cafcd51659bb0d1c745bd52dd4444999755347b6ce8759f108b8ea8a

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Binary packages built by this source

libseqlib-dev: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.
 .
 This package contains the header files and static library.

libseqlib0: C++ htslib/bwa-mem/fermi interface for interrogating sequence data

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.

libseqlib0-dbgsym: debug symbols for libseqlib0