Ubuntu
libseqlib package

libseqlib 1.1.2+dfsg-5 source package in Ubuntu

Changelog

libseqlib (1.1.2+dfsg-5) unstable; urgency=medium

  * Avoid using non-public HTSlib headers and functions
    and do not (Build-)Depend libhts-private-dev
    Closes: #946924
  * Standards-Version: 4.4.1
  * Set upstream metadata fields: Bug-Database.
  * Refresh symbols

 -- Andreas Tille <email address hidden>  Wed, 18 Dec 2019 14:17:13 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
libseqlib_1.1.2+dfsg-5.dsc 2.2 KiB 93bd135ff31be579c09498f3921ac7647609aace2713b959f0ead984ad0d91eb
libseqlib_1.1.2+dfsg.orig.tar.xz 153.7 KiB fda571050683e015dba119d6946b41287107a210166c9b4575ed5fba3070500e
libseqlib_1.1.2+dfsg-5.debian.tar.xz 12.2 KiB d26412c036155be87c92ecb123ecc3b4c6f3311d9705d8a79f0c6d2d6983b6b1

Available diffs

No changes file available.

Binary packages built by this source

libseqlib-dev: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.
 .
 This package contains the header files and static library.

libseqlib1: C++ htslib/bwa-mem/fermi interface for interrogating sequence data

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.

libseqlib1-dbgsym: debug symbols for libseqlib1