Ubuntu
libseqlib package

libseqlib 1.2.0+dfsg-11 source package in Ubuntu

Changelog

libseqlib (1.2.0+dfsg-11) unstable; urgency=medium

  * d/clean: new: cleanup leftovers. (Closes: #1047821)

 -- Étienne Mollier <email address hidden>  Thu, 14 Dec 2023 23:01:06 +0100

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
libseqlib_1.2.0+dfsg-11.dsc 2.3 KiB d38472fb937e889a3724d62120bcf1cac61c34a5db2c326d4b9fdec2de16e75c
libseqlib_1.2.0+dfsg.orig.tar.xz 145.5 KiB 408ee92e5041ff45d9d259d1507ef783e74c565d02e0c623ef0a67a7c387b953
libseqlib_1.2.0+dfsg-11.debian.tar.xz 15.1 KiB 9e85fd66de1a1e1fcb576e045cfd1fefbeed75b222450032dfdc0b39a39ba2ea

Available diffs

No changes file available.

Binary packages built by this source

libseqlib-dev: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.
 .
 This package contains the header files and static library.

libseqlib2: C++ htslib/bwa-mem/fermi interface for interrogating sequence data

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.

libseqlib2-dbgsym: debug symbols for libseqlib2