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libtfbs-perl package

libtfbs-perl 0.5.svn.20100421-1 source package in Ubuntu

Changelog

libtfbs-perl (0.5.svn.20100421-1) unstable; urgency=low

  * New upstream SVN snapshot fixing issue related to new naming conventions.
  * Arranged the get-orig-source target of debian/rules to pick the date
    of the last upstream commit.
  * Corrected Vcs fields in debian/control. 
  * Conforms with Policy 3.9.2:
    - Incremented Standards-Version in debian/control.
    - Mention GPL version 1 in debian/copyright.
  * Switch to Debhelper 8 and dh rules.
  * Converted debian/copyright to DEP-5 format.
 -- Ubuntu Archive Auto-Sync <email address hidden>   Mon,  17 Oct 2011 11:11:45 +0000

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Uploaded by:
Ubuntu Archive Auto-Sync
Uploaded to:
Precise
Original maintainer:
Debian Med
Architectures:
any
Section:
perl
Urgency:
Low Urgency

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libtfbs-perl_0.5.svn.20100421.orig.tar.gz 141.2 KiB b2dae09ba11f882b7598ffc7745e51d33f47a48088a499e80e3dcc8b527425e6
libtfbs-perl_0.5.svn.20100421-1.diff.gz 3.4 KiB d6b7d1eea224befc68616b6f195be55cef3bae28fc09b7a943f89725675fe052
libtfbs-perl_0.5.svn.20100421-1.dsc 2.0 KiB 195ab2e92e247e9a6fa546c1f606058d7bb1241a1d3b52fd1ae2aecf49e798c6

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Binary packages built by this source

libtfbs-perl: scanning DNA sequence with a position weight matrix

 The TFBS perl modules comprise a set of routines to interact with the
 Transfac and Jaspar databases that describe a special family of proteins,
 the transcription factors. These bind to genomic DNA to initiate (or
 prevent) the readout of a gene. Once multiple binding sites are known
 for a transcription factor, these are gathered in a single file and are
 aligned in order to find position-specific characteristica that might
 be used to predict such binding events in novel DNA sequences.
 .
 If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
 TFBS: Computational framework for transcription factor binding site analysis.
 Bioinformatics 18:1135-1136".