maffilter 1.3.1+dfsg-5build1 source package in Ubuntu
Changelog
maffilter (1.3.1+dfsg-5build1) noble; urgency=medium * No-change rebuild for boost defaults change. -- Matthias Klose <email address hidden> Tue, 19 Dec 2023 15:51:52 +0100
Upload details
- Uploaded by:
- Matthias Klose
- Uploaded to:
- Noble
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| maffilter_1.3.1+dfsg.orig.tar.xz | 75.0 MiB | 1767aae6061ca7d12682f7ded1e1b9f6ecad3d03fcfa02ff24b5351d51d8dc70 |
| maffilter_1.3.1+dfsg-5build1.debian.tar.xz | 4.7 KiB | e94d4c7619137c9afeca7313b19cfe74c46fbb14b7d5b17f69db55fc94a2e3ab |
| maffilter_1.3.1+dfsg-5build1.dsc | 2.2 KiB | a06d5cbae0566c648cac6801bdeb559b2fc74c1b89288a75026a4c16d82cd879 |
Available diffs
Binary packages built by this source
- maffilter: process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
- maffilter-dbgsym: debug symbols for maffilter
- maffilter-examples: process genome alignment in the Multiple Alignment Format (example data)
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
.
This package provides example data for maffilter.
