maffilter 1.3.1+dfsg-5build2 source package in Ubuntu
Changelog
maffilter (1.3.1+dfsg-5build2) noble; urgency=medium * No-change rebuild against libbpp-seq-omics3t64 -- Steve Langasek <email address hidden> Tue, 19 Mar 2024 06:04:50 +0000
Upload details
- Uploaded by:
- Steve Langasek
- Uploaded to:
- Noble
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| maffilter_1.3.1+dfsg.orig.tar.xz | 75.0 MiB | 1767aae6061ca7d12682f7ded1e1b9f6ecad3d03fcfa02ff24b5351d51d8dc70 |
| maffilter_1.3.1+dfsg-5build2.debian.tar.xz | 4.8 KiB | 7c87cf4e6b5c635f4aff1dcbca85e235fd0022fcc74fd83018696242d2b60430 |
| maffilter_1.3.1+dfsg-5build2.dsc | 2.3 KiB | a707878de4535a991c1385ebe4f1258fd9346c065c168fe670910c98081b420e |
Available diffs
Binary packages built by this source
- maffilter: process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
- maffilter-dbgsym: debug symbols for maffilter
- maffilter-examples: process genome alignment in the Multiple Alignment Format (example data)
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
.
This package provides example data for maffilter.
