Changelog
mcl (1:05-321-1) unstable; urgency=low
* New stable upstream release. (Missed 05-272, 05-300, 05-314.)
Some rephrased snippets from the announcement messages:
+ mcl-05-321:
This mainly adds 'transformation' functionality, which complements the
label-value streaming stuff. It means you can apply quite complex
transformations on values, albeit only context-insensive transformations.
+ mcl-05-314:
MCL can now read in label input in a simple line based format where
each lines contains two labels and an optional value separated by
whitespace. Output clusters are returned as lines of tab-separated
labels. The BLAST parser can stream this format directly to mcl
creating a very concise and easy to manage sequence clustering
pipeline. The mcl(1) manual now has a 'getting started' section
with some examples. New utility mcxload(1) with many custom options for
reading in label data and transforming the associated numerical values,
storing mappings in tab files and saving a graph in native mcl input
format.
+ mcl-05-300:
Important for mcxassemble users: Changed mcxassemble to pick the maximum
between repeated entries by default. Other noteworthy changes: mcxdump
can now also be used to restrict tab files, and: Fixed mcxsubs bug,
introduced in last release, where selections never materialize unless one
mysteriously specifies --rand-merge. No changes in mcl, only stuff done
to the graph manipulation programs.
+ mcl-05-272:
Major changes in clmimac, a noticeable change in mclblastline, a minor
addition to mcxdeblast, improved dump functionality in mcl. If you just
use mcl there is little need for upgrading.
mcl-05-272 adds some extra stuff to doc/mcl/examples/ .
As always, read changelog for details.
* debian/mcl-doc.doc-base.mcxload: added
* debian/{compat,control,rules}: move from debhelper compatibility level 3
to 4 (add ${misc:Depends} to Depends)
* debian/copyright: new snailmail address of FSF.
* debian/watch: make sure it doesn't match the symlink mcl-latest.tar.gz.
* debian/rules, debian/mcl-doc.install: no longer install upstream TODO file:
it's not useful for users.
* debian/control: fix versioned conflicts syntax
* debian/rules: make proper use of comments: don't clobber build output.
* debian/control: Standards Version bumped from 3.6.1.0 to 3.6.2.0 (no
changes needed).
-- Joost van Baal <email address hidden> Wed, 23 Nov 2005 16:36:39 +0100
