Change log for mdanalysis package in Ubuntu

mdanalysis (2.5.0+dfsg1-2build1) noble; urgency=medium

  * No-change rebuild to build with python3.12 as supported.

 -- Matthias Klose <email address hidden>  Thu, 02 Nov 2023 19:23:30 +0100

Available diffs

• diff from 2.5.0+dfsg1-2 (in Debian) to 2.5.0+dfsg1-2build1 (362 bytes)

mdanalysis (2.5.0+dfsg1-2) unstable; urgency=medium

  * debian patches gsd3_PR4153.diff and gsd3_PR4174.diff apply
    upstream PR#4153 and #4174 to enable support for gsd 3.

 -- Drew Parsons <email address hidden>  Fri, 28 Jul 2023 12:43:14 +0200

Available diffs

• diff from 2.5.0+dfsg1-1 to 2.5.0+dfsg1-2 (4.6 KiB)

mdanalysis (2.5.0+dfsg1-1) unstable; urgency=medium

  * New upstream release.
    - Depends: python3-numpy (>= 1.21.0~)
    - drop Build-Depends: python3-mock (now uses unittest.mock)
  * reorder Build-Depends by order in setup.py

 -- Drew Parsons <email address hidden>  Sun, 18 Jun 2023 00:13:39 +0200

Available diffs

• diff from 2.4.2+dfsg1-1build1 (in Ubuntu) to 2.5.0+dfsg1-1 (104.0 KiB)

mdanalysis (2.4.2+dfsg1-1build1) lunar; urgency=medium

  * No-change rebuild with Python 3.11 only

 -- Graham Inggs <email address hidden>  Wed, 15 Mar 2023 06:33:00 +0000

Available diffs

• diff from 2.4.2+dfsg1-1 (in Debian) to 2.4.2+dfsg1-1build1 (329 bytes)

mdanalysis (2.4.2+dfsg1-1) unstable; urgency=medium

  * New upstream release.
    - fixes DensityAnalysis for numpy 1.24. Closes: #1027227,

 -- Drew Parsons <email address hidden>  Mon, 09 Jan 2023 17:54:02 +0100

Available diffs

• diff from 2.3.0+dfsg1-1 to 2.4.2+dfsg1-1 (96.5 KiB)
• diff from 2.4.1+dfsg1-1 to 2.4.2+dfsg1-1 (4.1 KiB)

mdanalysis (2.4.1+dfsg1-1) unstable; urgency=medium

  * New upstream release.
    - update Build-Depends: python3-biopython (>= 1.80)
  * mark python-mdanalysis-doc as Multi-Arch: foreign
  * Standards-Version: 4.6.2

 -- Drew Parsons <email address hidden>  Fri, 23 Dec 2022 11:52:12 +0100

Available diffs

• diff from 2.3.0+dfsg1-1 to 2.4.1+dfsg1-1 (94.1 KiB)

mdanalysis (2.3.0+dfsg1-1) unstable; urgency=medium

  * New upstream release.
    - applies debian patch tests_floating_point.patch
  * Build-Depends: pybuild-plugin-pyproject to use pyproject.toml
    - update Build-Depends: python3-numpy (>= 1.20.0~),
      python3-networkx (>= 2.0),
      python3-scipy (>= 1.5.0),
      python3-gsd (>= 1.9.3~),
      python3-packaging,
      python3-fasteners
    - drop Build-Depends: python3-six
  * Build-Depends-Indep: python3-pybtex, python3-sphinx-rtd-theme,
    python3-sphinx-sitemap, python3-sphinxcontrib.bibtex
    - drop debian patch docs_missing_sphinx_sitemap.patch
  * Standards-Version: 4.6.1

 -- Drew Parsons <email address hidden>  Mon, 07 Nov 2022 23:10:36 +0100

Available diffs

• diff from 2.0.0+dfsg1-4build2 (in Ubuntu) to 2.3.0+dfsg1-1 (228.7 KiB)

mdanalysis (2.0.0+dfsg1-4build2) lunar; urgency=medium

  * No-change rebuild with Python 3.11 as supported

 -- Graham Inggs <email address hidden>  Thu, 03 Nov 2022 19:11:38 +0000

Available diffs

• diff from 2.0.0+dfsg1-4build1 to 2.0.0+dfsg1-4build2 (330 bytes)

mdanalysis (2.0.0+dfsg1-4build1) jammy; urgency=medium

  * No-change rebuild with Python 3.10 only

 -- Graham Inggs <email address hidden>  Wed, 16 Mar 2022 19:23:34 +0000

Available diffs

• diff from 2.0.0+dfsg1-4 (in Debian) to 2.0.0+dfsg1-4build1 (353 bytes)

mdanalysis (2.0.0+dfsg1-4) unstable; urgency=medium

  * source upload to allow python-mdanalysis-doc to migrate to testing

 -- Drew Parsons <email address hidden>  Fri, 18 Feb 2022 17:17:45 +0100

Available diffs

• diff from 2.0.0+dfsg1-3 to 2.0.0+dfsg1-4 (332 bytes)

mdanalysis (2.0.0+dfsg1-3) unstable; urgency=medium

  * provide docs in python-mdanalysis-doc package
    - Build-Depends: python3-sphinx, python3-msmb-theme, libjs-mathjax
    - add debian privacy patches
      * docs_local_mathjax.patch use local mathjax.js script
      * docs_privacy.patch removes goat counter from footer

 -- Drew Parsons <email address hidden>  Sun, 13 Feb 2022 11:48:11 +0100

Available diffs

• diff from 2.0.0+dfsg1-2 to 2.0.0+dfsg1-3 (2.6 KiB)

mdanalysis (2.0.0+dfsg1-2) unstable; urgency=medium

  * Build with -ffloat-store on i386 to workaround x87 excess
    precision causing test failures. Thanks Adrian Bunk.
  * add debian patches to enable successful build of docs
    - docs_no_logo.patch skips use of logo image files
      (upstream does not give permission to use them)
    - docs_missing_sphinx_sitemap.patch skips sphinx_sitemap
      (not yet packaged for Debian)
    - docs_sphinx_warnings_are_not_errors.patch stops treating sphinx
      warnings as errors (needed to ignore inconsistent documentation
      of analysis.density)
    - note that the doc package itself is not yet provided
  * debian patch tests_floating_point.patch fixes test of floating
    point numbers (upstream Issue#3524)
  * execute dh_numpy3 after dh_python3 to assign python3-numpy-abi
  * remove autogenerated files left after dh_auto_clean and pytest

 -- Drew Parsons <email address hidden>  Thu, 10 Feb 2022 19:36:31 +0100

Available diffs

• diff from 2.0.0+dfsg1-1 to 2.0.0+dfsg1-2 (2.6 KiB)

mdanalysis (2.0.0+dfsg1-1) unstable; urgency=medium

  * New upstream release.
    - Build-Depends:
       python3-h5py,
       python3-numpy (>= 1.16.0~),
       python3-netcdf4 (>= 1.0~),
       python3-seaborn,
       python3-sklearn,
       python3-threadpoolctl
    - applies debian patch fix_matplotlib_PR2763.patch
  * Standards-Version: 4.6.0
  * add detailed copyright entries (GPL-2 and GPL-3) to
    debian/copyright, identified by :Copyright: tag in files.
    CODE_OF_CONDUCT.md is CCA-3.0.
  * debian/rules override_dh_clean: remove .c cython files
  * run tests with MPLBACKEND=agg to avoid Xserver (Xvfb) errors
  * Note that logo files are not used in source (+dfsg) since they are
    non-free (not free to alter and redistribute alterations)

 -- Drew Parsons <email address hidden>  Fri, 03 Sep 2021 03:12:37 +0200