Ubuntu
microbiomeutil package

microbiomeutil 20101212+dfsg1-3 source package in Ubuntu

Changelog

microbiomeutil (20101212+dfsg1-3) unstable; urgency=medium

  * chimeraslyer: Depends: ncbi-blast+-legacy
    Closes: #946537
  * nast-ier: Recommends: ncbi-blast+
  * debhelper-compat 12
  * Standards-Version: 4.4.1
  * Secure URI in copyright format
  * Remove trailing whitespace in debian/changelog
  * Remove trailing whitespace in debian/control
  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g

 -- Andreas Tille <email address hidden>  Wed, 11 Dec 2019 09:50:55 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release universe misc

Downloads

File Size SHA-256 Checksum
microbiomeutil_20101212+dfsg1-3.dsc 2.3 KiB dd48c65abbbc46cb604c7289d7dba5d705de1b850c365d295a5f9694a5305162
microbiomeutil_20101212+dfsg1.orig.tar.xz 1.5 MiB f6e75eb1ccbaca07c862f5e548850bb87c37279678250cd36f5804d673bbd56c
microbiomeutil_20101212+dfsg1-3.debian.tar.xz 9.6 KiB 1ced512ddcd88c7a83b17546b18429440f3959518381569e9a4d71442d6c11af

No changes file available.

Binary packages built by this source

chimeraslayer: No summary available for chimeraslayer in ubuntu hirsute.

No description available for chimeraslayer in ubuntu hirsute.

microbiomeutil: Microbiome Analysis Utilities

 The microbiomeutil package comes with the following utilities:
  * ChimeraSlayer: ChimeraSlayer for chimera detection.
  * NAST-iEr: NAST-based alignment tool.
  * WigeoN: A reimplementation of the Pintail 16S anomaly
                    detection utility
  * RESOURCES: Reference 16S sequences and NAST-alignments that
                    the tools above leverage.

microbiomeutil-data: Reference 16S sequences and NAST-alignments used by microbiomeutil tools

 Reference data for tools in the microbiomeutil package. The algorithms
 used by the tools chimeraslayer, nast-ier and wigeon are based on
 reference data which are provided by this package.

nast-ier: No summary available for nast-ier in ubuntu hirsute.

No description available for nast-ier in ubuntu hirsute.

nast-ier-dbgsym: debug symbols for nast-ier
wigeon: reimplementation of the Pintail 16S DNA anomaly detection utility

 WigeoN examines the sequence conservation between a query and a trusted
 reference sequence, both in NAST alignment format. Based on the sequence
 identity between the query and the reference sequence, there is an
 expected amount of variation among the alignment. If the observed
 variation is greater than the 95% quantile of the distribution of
 variation observed between non-anomalous sequences, then it is flagged
 as an anomaly.
 .
 WigeoN is a flexible command-line based reimplementation of the Pintail
 algorithm Appl Environ Microbiol. 2005 Dec;7112:7724-36.
 .
 WigeoN is useful for flagging chimeras and anomalies only in near
 full-length 16S rRNA sequences. WigeoN lacks sensitivity with sequences
 less than 1000 bp.
 .
 To run WigeoN, you need NAST-formatted sequences generated by the
 nast-ier utility.
 .
 WigeoN is part of the microbiomeutil suite.