Ubuntu
minimap2 package

minimap2 2.24+dfsg-3build2 source package in Ubuntu

Changelog

minimap2 (2.24+dfsg-3build2) noble; urgency=medium

  * No-change rebuild to build with python3.12 as supported.

 -- Matthias Klose <email address hidden>  Thu, 02 Nov 2023 09:22:53 +0100

Upload details

Uploaded by:
Matthias Klose
Uploaded to:
Noble
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
minimap2_2.24+dfsg.orig.tar.xz 190.5 KiB bd8e76cad8e4d4ea19844707bf4f2a825de10372dc6c8ba15426ef9c20854b0f
minimap2_2.24+dfsg-3build2.debian.tar.xz 11.1 KiB ed07bea46c87bf1019f9bc2250a11c3469a169355a790e013d9c4b83af6901ea
minimap2_2.24+dfsg-3build2.dsc 2.3 KiB 578099bb70649a857e2f84c71b72ca7b5f0855c0cb467df6e42060b375bf73ee

View changes file

Binary packages built by this source

libminimap2-dev: development headers for libminimap

 Minimap2 is a versatile sequence alignment program that aligns DNA or
 mRNA sequences against a large reference database. Typical use cases
 include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
 human genome; (2) finding overlaps between long reads with error rate up
 to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
 or Direct RNA reads against a reference genome; (4) aligning Illumina
 single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
 genome alignment between two closely related species with divergence
 below ~15%.
 .
 This package contains the C library headers for using minimap in custom tools,
 along with a static library.

minimap2: versatile pairwise aligner for genomic and spliced nucleotide sequences

 Minimap2 is a versatile sequence alignment program that aligns DNA or
 mRNA sequences against a large reference database. Typical use cases
 include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
 human genome; (2) finding overlaps between long reads with error rate up
 to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
 or Direct RNA reads against a reference genome; (4) aligning Illumina
 single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
 genome alignment between two closely related species with divergence
 below ~15%.
 .
 For ~10kb noisy reads sequences, minimap2 is tens of times faster than
 mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
 is more accurate on simulated long reads and produces biologically
 meaningful alignment ready for downstream analyses. For >100bp Illumina
 short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
 as accurate on simulated data. Detailed evaluations are available from
 the minimap2 paper or the preprint.

minimap2-dbgsym: debug symbols for minimap2
python3-mappy: Python3 interface minimap2

 Minimap2 is a versatile sequence alignment program that aligns DNA or
 mRNA sequences against a large reference database. Typical use cases
 include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
 human genome; (2) finding overlaps between long reads with error rate up
 to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
 or Direct RNA reads against a reference genome; (4) aligning Illumina
 single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
 genome alignment between two closely related species with divergence
 below ~15%.
 .
 This package contains the Python3 interface for using minimap2.

python3-mappy-dbgsym: debug symbols for python3-mappy