Change log for openstructure package in Ubuntu

openstructure (2.5.0-1ubuntu5) noble; urgency=medium

  * No-change rebuild against libqt5core5t64.

 -- Colin Watson <email address hidden>  Sun, 14 Apr 2024 23:24:40 +0100

Available diffs

• diff from 2.5.0-1ubuntu4 to 2.5.0-1ubuntu5 (325 bytes)

openstructure (2.5.0-1ubuntu4) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- Steve Langasek <email address hidden>  Sun, 31 Mar 2024 20:28:14 +0000

Available diffs

• diff from 2.5.0-1ubuntu3 to 2.5.0-1ubuntu4 (322 bytes)

openstructure (2.5.0-1ubuntu3) noble; urgency=medium

  * No-change rebuild against libqt5core5t64

 -- Steve Langasek <email address hidden>  Fri, 15 Mar 2024 06:13:30 +0000

Available diffs

• diff from 2.5.0-1ubuntu1 to 2.5.0-1ubuntu3 (381 bytes)
• diff from 2.5.0-1ubuntu2 to 2.5.0-1ubuntu3 (319 bytes)

openstructure (2.5.0-1ubuntu2) noble; urgency=medium

  * No-change rebuild against libpng16-16t64

 -- Steve Langasek <email address hidden>  Thu, 29 Feb 2024 07:41:58 +0000

Available diffs

• diff from 2.5.0-1ubuntu1 to 2.5.0-1ubuntu2 (350 bytes)

openstructure (2.5.0-1ubuntu1) noble; urgency=medium

  * Add a dummy test to test_sec_struct.py to avoid FTBFS due to
    Python 3.12 now returning 5 instead of 0 when all tests are skipped

 -- Graham Inggs <email address hidden>  Tue, 23 Jan 2024 10:36:33 +0000

Available diffs

• diff from 2.5.0-1build1 to 2.5.0-1ubuntu1 (930 bytes)
• diff from 2.5.0-1build2 to 2.5.0-1ubuntu1 (889 bytes)

openstructure (2.5.0-1build2) noble; urgency=medium

  * No-change rebuild with Python 3.12 as default

 -- Graham Inggs <email address hidden>  Sat, 20 Jan 2024 08:57:25 +0000

Available diffs

• diff from 2.5.0-1build1 to 2.5.0-1build2 (321 bytes)

openstructure (2.5.0-1build1) noble; urgency=medium

  * No-change rebuild for boost defaults change.

 -- Matthias Klose <email address hidden>  Tue, 19 Dec 2023 15:53:52 +0100

Available diffs

• diff from 2.5.0-1 (in Debian) to 2.5.0-1build1 (316 bytes)

openstructure (2.5.0-1) unstable; urgency=medium

  * Upload to unstable.

 -- Andrius Merkys <email address hidden>  Mon, 24 Jul 2023 01:49:41 -0400

Available diffs

• diff from 2.3.1-9build1 (in Ubuntu) to 2.5.0-1 (1.3 MiB)

openstructure (2.3.1-9build1) mantic; urgency=medium

  * Rebuild against latest openmm

 -- Jeremy Bícha <email address hidden>  Tue, 27 Jun 2023 14:04:42 -0400

Available diffs

• diff from 2.3.1-9 (in Debian) to 2.3.1-9build1 (344 bytes)

openstructure (2.3.1-9) unstable; urgency=medium

  * libost-base2.3: Add Breaks: libost-base2.2 for smoother upgrades from
    bullseye. (Closes: #1036639)

 -- Andrius Merkys <email address hidden>  Wed, 24 May 2023 00:56:53 -0400

Available diffs

• diff from 2.3.1-8build4 (in Ubuntu) to 2.3.1-9 (797 bytes)

openstructure (2.3.1-8build4) lunar; urgency=medium

  * Rebuild against latest icu

 -- Jeremy Bicha <email address hidden>  Sun, 05 Feb 2023 11:12:55 -0500

Available diffs

• diff from 2.3.1-8build2 to 2.3.1-8build4 (351 bytes)
• diff from 2.3.1-8build3 to 2.3.1-8build4 (298 bytes)

openstructure (2.3.1-8build3) lunar; urgency=medium

  * Rebuild against latest tiff

 -- Jeremy Bicha <email address hidden>  Sat, 04 Feb 2023 21:44:35 -0500

Available diffs

• diff from 2.3.1-8build2 to 2.3.1-8build3 (327 bytes)

openstructure (2.3.1-8build2) lunar; urgency=medium

  * No-change rebuild with Python 3.11 as default

 -- Graham Inggs <email address hidden>  Mon, 26 Dec 2022 09:58:41 +0000

Available diffs

• diff from 2.3.1-8build1 to 2.3.1-8build2 (344 bytes)

openstructure (2.3.1-8build1) kinetic; urgency=medium

  * No-change rebuild to pick up fixed libboost-python dependencies

 -- Graham Inggs <email address hidden>  Sat, 03 Sep 2022 13:14:45 +0000

Available diffs

• diff from 2.3.1-8 (in Debian) to 2.3.1-8build1 (355 bytes)

openstructure (2.3.1-8) unstable; urgency=medium

  * Install shlibs into multiarch locations using debian/rules.
  * Build with OpenMM support only on architectures where it builds.
  * Turn on the optimization.

 -- Andrius Merkys <email address hidden>  Tue, 16 Aug 2022 03:15:29 -0400

Available diffs

• diff from 2.3.1-6 to 2.3.1-8 (2.2 KiB)

openstructure (2.3.1-6) unstable; urgency=medium

  * Backport two upstream commits fixing build and integration with OpenMM.
  * Add Provides and X-Python3-Version for Python module.
  * Add Recommends: libcifpp-data for openstructure package to keep the
    compounds library up-to-date.
  * Add debian/README.Debian describing handling of PDB compound library.

 -- Andrius Merkys <email address hidden>  Tue, 03 May 2022 04:41:27 -0400

Available diffs

• diff from 2.3.1-2build1 (in Ubuntu) to 2.3.1-6 (3.7 KiB)
• diff from 2.3.1-5 to 2.3.1-6 (2.8 KiB)

openstructure (2.3.1-5) unstable; urgency=medium

  * Adjust permissions of generated compounds library.
  * Enhance postinst output to make clear what it does.

 -- Andrius Merkys <email address hidden>  Wed, 27 Apr 2022 10:56:34 -0400

openstructure (2.3.1-2build1) jammy; urgency=medium

  * No-change rebuild against libboost-regex1.74.0-icu70.

 -- Matthias Klose <email address hidden>  Fri, 18 Feb 2022 06:08:34 +0100

Available diffs

• diff from 2.2.0-6 (in Debian) to 2.3.1-2build1 (233.9 KiB)
• diff from 2.3.1-2 (in Debian) to 2.3.1-2build1 (357 bytes)

openstructure (2.3.1-2) unstable; urgency=medium

  * Fixing upgrade failures for openstructure package (Closes: #1004685).
  * Update standards version to 4.6.0, no changes needed.

 -- Andrius Merkys <email address hidden>  Tue, 01 Feb 2022 01:26:38 -0500

Available diffs

• diff from 2.3.1-1 to 2.3.1-2 (719 bytes)

openstructure (2.3.1-1) unstable; urgency=medium

  * New upstream version 2.3.1
  * Refreshing patches, dropping upstream-integrated ones.
  * Adding missing quotes to debian/libcifpp/openstructure.

 -- Andrius Merkys <email address hidden>  Mon, 31 Jan 2022 01:26:20 -0500

Available diffs

• diff from 2.3.0~rc-1 to 2.3.1-1 (8.5 KiB)

openstructure (2.3.0~rc-1) unstable; urgency=medium

  * New upstream version 2.3.0~rc
  * Adding a trigger to be run by libcifpp to generate compounds.chemlib.
  * Removing upstream-integrated patches from debian/patches/series.
  * Fixing compatibility with OpenMM 7.7 via upstream patch.
  * Disabling increase-test-tolerance.patch for now.
  * Bumping copyright years.

 -- Andrius Merkys <email address hidden>  Wed, 19 Jan 2022 06:42:42 -0500

Available diffs

• diff from 2.2.0-9build1 (in Ubuntu) to 2.3.0~rc-1 (229.4 KiB)

openstructure (2.2.0-9build1) jammy; urgency=medium

  * No-change rebuild with Python 3.10 as default version

 -- Graham Inggs <email address hidden>  Fri, 14 Jan 2022 11:36:08 +0000

Available diffs

• diff from 2.2.0-9 (in Debian) to 2.2.0-9build1 (357 bytes)

openstructure (2.2.0-9) unstable; urgency=medium

  * Fixing incompatibility with matplotlib 3.5 (Closes: #999514)

 -- Andrius Merkys <email address hidden>  Fri, 31 Dec 2021 06:57:26 -0500

Available diffs

• diff from 2.2.0-8 to 2.2.0-9 (732 bytes)

openstructure (2.2.0-8) unstable; urgency=medium

  * Replacing hardcoded multiarch path with ${DEB_HOST_MULTIARCH} in
    debian/rules.

 -- Andrius Merkys <email address hidden>  Mon, 06 Sep 2021 10:28:49 -0400

openstructure (2.2.0-6) unstable; urgency=medium

  * Adding upstream-provided patch to fix tests on arm64.

 -- Andrius Merkys <email address hidden>  Wed, 10 Feb 2021 04:33:33 -0500

Available diffs

• diff from 2.2.0-5 to 2.2.0-6 (1.4 KiB)

openstructure (2.2.0-5) unstable; urgency=medium

  * Applying upstream patches to fix the compatibility with dssp >= 4.
  * Bringing back tests with dssp.

 -- Andrius Merkys <email address hidden>  Wed, 06 Jan 2021 09:30:24 -0500

Available diffs

• diff from 2.2.0-4 to 2.2.0-5 (2.6 KiB)

openstructure (2.2.0-4) unstable; urgency=medium

  * Adding upstream-provided patch to increase test tolerances in order to
    fix builds on arm64 and other architectures.

 -- Andrius Merkys <email address hidden>  Tue, 05 Jan 2021 07:51:29 -0500

Available diffs

• diff from 2.2.0-3 to 2.2.0-4 (1.2 KiB)

openstructure (2.2.0-3) unstable; urgency=medium

  * Skipping tests for dssp, as dssp >= 4 is incompatible with current
    openstructure code.

 -- Andrius Merkys <email address hidden>  Mon, 21 Dec 2020 01:08:59 -0500

Available diffs

• diff from 2.2.0-2build1 (in Ubuntu) to 2.2.0-3 (910 bytes)

openstructure (2.2.0-2build1) hirsute; urgency=medium

  * No-change rebuild for boost soname change.

 -- Matthias Klose <email address hidden>  Sat, 12 Dec 2020 13:09:48 +0100

Available diffs

• diff from 2.2.0-2 (in Debian) to 2.2.0-2build1 (331 bytes)

openstructure (2.2.0-2) unstable; urgency=medium

  * Installing files for libdevel packages.
  * Dropping test dependency on dssp for now due to test failures.

 -- Andrius Merkys <email address hidden>  Wed, 09 Dec 2020 02:00:44 -0500

Available diffs

• diff from 2.2.0-1 to 2.2.0-2 (1.5 KiB)

openstructure (2.2.0-1) unstable; urgency=medium

  * New upstream version 2.2.0
  * Refreshing patches.

 -- Andrius Merkys <email address hidden>  Mon, 23 Nov 2020 01:35:58 -0500

Available diffs

• diff from 2.1.0-1 to 2.2.0-1 (122.8 KiB)
• diff from 2.2.0~rc-1 to 2.2.0-1 (2.2 KiB)

openstructure (2.2.0~rc-1) unstable; urgency=medium

  * New upstream version 2.2.0~rc (Closes: #972771).
  * Refreshing and describing patches.
  * Bumping Standards-Version (no changes).
  * Bumping debhelper-compat (no changes).

 -- Andrius Merkys <email address hidden>  Thu, 19 Nov 2020 06:37:26 -0500

Available diffs

• diff from 2.1.0-1build1 (in Ubuntu) to 2.2.0~rc-1 (122.1 KiB)

openstructure (2.1.0-1build1) hirsute; urgency=medium

  * No-change rebuild to build with python3.9 as default.

 -- Matthias Klose <email address hidden>  Thu, 19 Nov 2020 18:37:31 +0100

Available diffs

• diff from 2.1.0-1 (in Debian) to 2.1.0-1build1 (327 bytes)

openstructure (2.1.0-1) unstable; urgency=medium

  * New upstream version 2.1.0
  * Refreshing patches.
  * Accommodating soname change.

 -- Andrius Merkys <email address hidden>  Fri, 18 Sep 2020 04:12:51 -0400

Available diffs

• diff from 2.0.0-3 to 2.1.0-1 (24.2 MiB)

openstructure (2.0.0-3) unstable; urgency=medium

  * Installing gosty and ost_config.
  * Cleaning leftover files.
  * Adjusting paths in Debian installation (Closes: #965959).

 -- Andrius Merkys <email address hidden>  Fri, 31 Jul 2020 07:17:40 -0400

Available diffs

• diff from 2.0.0-2 to 2.0.0-3 (1.2 KiB)
• diff from 2.0.0-2build1 (in Ubuntu) to 2.0.0-3 (1.4 KiB)

openstructure (2.0.0-2build1) groovy; urgency=medium

  * No-change rebuild against libboost-regex1.71.0-icu67

 -- Steve Langasek <email address hidden>  Tue, 28 Jul 2020 19:23:01 +0000

Available diffs

• diff from 2.0.0-2 (in Debian) to 2.0.0-2build1 (540 bytes)

openstructure (2.0.0-2) unstable; urgency=medium

  * Adding explicit build-dependency on libglu1-mesa-dev.
  * Avoiding running tests in .pc directory.

 -- Andrius Merkys <email address hidden>  Thu, 25 Jun 2020 01:13:25 -0400

Available diffs

• diff from 2.0.0-1 to 2.0.0-2 (581 bytes)

openstructure (2.0.0-1) unstable; urgency=medium

  * Initial release (Closes: #953414)

 -- Andrius Merkys <email address hidden>  Wed, 25 Mar 2020 07:49:04 -0400