Ubuntu
pairtools package

pairtools 0.3.0-3.1 source package in Ubuntu

Changelog

pairtools (0.3.0-3.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Patch: Support Python 3.10. (Closes: #1000337)

 -- Stefano Rivera <email address hidden>  Sun, 21 Nov 2021 16:13:08 -0400

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
pairtools_0.3.0-3.1.dsc 1.6 KiB ab9967aeff308279b1a0bdab7b0108baa2129591a4f51d127bb932a885e35aa8
pairtools_0.3.0.orig.tar.gz 404.3 KiB 2dce1e4b259c81c5e367c337143b73b1dac984cd73cc7ebb7be358a2c5ec3ed1
pairtools_0.3.0-3.1.debian.tar.xz 4.9 KiB a4943d6a06ed8c47ca8f36cd3dcffd033871eda909df58ef0814eaa183fb223e

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Binary packages built by this source

python3-pairtools: Framework to process sequencing data from a Hi-C experiment

 Simple and fast command-line framework to process sequencing data from a Hi-C
 experiment.
 .
 Process pair-end sequence alignments and perform the following operations:
 .
   - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
     sequences of Hi-C DNA molecules
   - Sort .pairs files for downstream analyses
   - Detect, tag and remove PCR/optical duplicates
   - Generate extensive statistics of Hi-C datasets
   - Select Hi-C pairs given flexibly defined criteria
   - Restore .sam alignments from Hi-C pairs

python3-pairtools-dbgsym: debug symbols for python3-pairtools
python3-pairtools-examples: Process sequencing data from a Hi-C experiment (examples)

 Simple and fast command-line framework to process sequencing data from a Hi-C
 experiment.
 .
 Process pair-end sequence alignments and perform the following operations:
 .
   - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
     sequences of Hi-C DNA molecules
   - Sort .pairs files for downstream analyses
   - Detect, tag and remove PCR/optical duplicates
   - Generate extensive statistics of Hi-C datasets
   - Select Hi-C pairs given flexibly defined criteria
   - Restore .sam alignments from Hi-C pairs
 .
 This package contains some examples