parallel-fastq-dump 0.6.7-2 source package in Ubuntu
Changelog
parallel-fastq-dump (0.6.7-2) unstable; urgency=medium
* Exclude i386 build in salsa-ci since it is implicitly excluded by
Build-Depends: sra-toolkit
* Do not mention protip in long description
Closes: #1004731
* Prefer tags over releases in watch file
-- Andreas Tille <email address hidden> Wed, 02 Feb 2022 08:08:25 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Jammy | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| parallel-fastq-dump_0.6.7-2.dsc | 2.1 KiB | e2b7b0247d9c533c0d083152e9b5b3c91ef7af524a753f768bbec68f4e50ae95 |
| parallel-fastq-dump_0.6.7.orig.tar.gz | 4.1 KiB | cb33ea0ed0b1123c100aee7b9ea60a3fc3fc81a3a46be5237c85ba56380617de |
| parallel-fastq-dump_0.6.7-2.debian.tar.xz | 2.7 KiB | 1f1c1fb516fdb57c1d143df718daa298eac0ba640b228f2e0dbeb32244d48888 |
Available diffs
- diff from 0.6.7-1 to 0.6.7-2 (1.0 KiB)
No changes file available.
Binary packages built by this source
- parallel-fastq-dump: parallel fastq-dump wrapper
NCBI fastq-dump can be very slow sometimes, even if you have the resources
(network, IO, CPU) to go faster, even if you already downloaded the sra
file. This tool speeds up the process by dividing the work into multiple
threads.
.
This is possible because fastq-dump have options (-N and -X) to query
specific ranges of the sra file, this tool works by dividing the work
into the requested number of threads, running multiple fastq-dump in
parallel and concatenating the results back together, as if you had just
executed a plain fastq-dump call.
