parallel-fastq-dump 0.6.7-3 source package in Ubuntu
Changelog
parallel-fastq-dump (0.6.7-3) unstable; urgency=medium * Team Upload. * add autopkgtest -- Mohammed Bilal <email address hidden> Tue, 29 Mar 2022 18:31:28 +0000
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc | |
| Noble | release | universe | misc | |
| Mantic | release | universe | misc | |
| Lunar | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| parallel-fastq-dump_0.6.7-3.dsc | 2.1 KiB | d2f9202e60bb02250e9d4bf68bb1d737f33777ca8512c2e54b5609980368b1fe |
| parallel-fastq-dump_0.6.7.orig.tar.gz | 4.1 KiB | cb33ea0ed0b1123c100aee7b9ea60a3fc3fc81a3a46be5237c85ba56380617de |
| parallel-fastq-dump_0.6.7-3.debian.tar.xz | 3.0 KiB | b9c66d93be3feaf1ae18f9f1b0389c5daa188ff80272b3eb6598f3b6642f3e94 |
Available diffs
- diff from 0.6.7-2 to 0.6.7-3 (713 bytes)
No changes file available.
Binary packages built by this source
- parallel-fastq-dump: parallel fastq-dump wrapper
NCBI fastq-dump can be very slow sometimes, even if you have the resources
(network, IO, CPU) to go faster, even if you already downloaded the sra
file. This tool speeds up the process by dividing the work into multiple
threads.
.
This is possible because fastq-dump have options (-N and -X) to query
specific ranges of the sra file, this tool works by dividing the work
into the requested number of threads, running multiple fastq-dump in
parallel and concatenating the results back together, as if you had just
executed a plain fastq-dump call.
