Ubuntu
pbdagcon package

pbdagcon 0.3+git20180411.c14c422+dfsg-1 source package in Ubuntu

Changelog

pbdagcon (0.3+git20180411.c14c422+dfsg-1) unstable; urgency=medium

  * Add myself to Uploaders to have at least one human uploader after
    Afif removed himself.
  * Run 2to3 on Python2 files to try a Python3 port
    Closes: #937254
  * New upstream version
  * debhelper-compat 12
  * Standards-Version: 4.5.0
  * Build-Depends: s/python/python3/
  * Build-Depends: libpbcopper-dev, libpbihdf-dev
  * Replace outdated code copies of DAZZ_DB
    Closes: #949542
  * Latest libpbihdf and libpbdata are header only libs
  * Drop outdated copy of DAZZ_DB here
  * Recommend creating a real library in README.source
  * Versioned (Build-)Depends

 -- Andreas Tille <email address hidden>  Tue, 28 Jan 2020 11:13:47 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
pbdagcon_0.3+git20180411.c14c422+dfsg-1.dsc 2.3 KiB 1dd267bee26cd9ab7852b03b0b8960b81e6211d9a142fc7db1188fe8f8ffb513
pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz 77.9 KiB f554fedfaa673cb22bebb28d941139e72a1a9284039929c92b16d9c58fc1f8b9
pbdagcon_0.3+git20180411.c14c422+dfsg-1.debian.tar.xz 55.2 KiB 1aecdce31d709576fb0cc0ee3f822797e4b8daa36fd9c2d06e915b0d0a075305

No changes file available.

Binary packages built by this source

pbdagcon: sequence consensus using directed acyclic graphs

 pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus)
 which is a sequence consensus algorithm based on using directed acyclic
 graphs to encode multiple sequence alignment.
 .
 It uses the alignment information from blasr to align sequence reads to a
 "backbone" sequence. Based on the underlying alignment directed acyclic graph
 (DAG), it will be able to use the new information from the reads to find the
 discrepancies between the reads and the "backbone" sequences. A dynamic
 programming process is then applied to the DAG to find the optimum sequence
 of bases as the consensus. The new consensus can be used as a new backbone
 sequence to iteratively improve the consensus quality.
 .
 While the code is developed for processing PacBio(TM) raw sequence data,
 the algorithm can be used for general consensus purpose. Currently, it only
 takes FASTA input. For shorter read sequences, one might need to adjust the
 blasr alignment parameters to get the alignment string properly.
 .
 The code and the underlying graphical data structure have been used for some
 algorithm development prototyping including phasing reads and pre-assembly.

pbdagcon-dbgsym: debug symbols for pbdagcon