Ubuntu
pbdagcon package

pbdagcon 0.3+git20180411.c14c422+dfsg-6 source package in Ubuntu

Changelog

pbdagcon (0.3+git20180411.c14c422+dfsg-6) unstable; urgency=medium

  * Rebuild against libpbcopper
    Closes: #1005437

 -- Andreas Tille <email address hidden>  Sun, 13 Feb 2022 14:03:08 +0100

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
pbdagcon_0.3+git20180411.c14c422+dfsg-6.dsc 2.4 KiB 51d40e919d6bd1f1159b38c56b1df79fbd0c9e2fd0f3dfd18a7cc009a6b1e4ce
pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz 77.9 KiB f554fedfaa673cb22bebb28d941139e72a1a9284039929c92b16d9c58fc1f8b9
pbdagcon_0.3+git20180411.c14c422+dfsg-6.debian.tar.xz 56.5 KiB e257b9f214413059302a09cc9007f5cb5dd53b6a83d1045f285d7a32136e7409

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Binary packages built by this source

pbdagcon: sequence consensus using directed acyclic graphs

 pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus)
 which is a sequence consensus algorithm based on using directed acyclic
 graphs to encode multiple sequence alignment.
 .
 It uses the alignment information from blasr to align sequence reads to a
 "backbone" sequence. Based on the underlying alignment directed acyclic graph
 (DAG), it will be able to use the new information from the reads to find the
 discrepancies between the reads and the "backbone" sequences. A dynamic
 programming process is then applied to the DAG to find the optimum sequence
 of bases as the consensus. The new consensus can be used as a new backbone
 sequence to iteratively improve the consensus quality.
 .
 While the code is developed for processing PacBio(TM) raw sequence data,
 the algorithm can be used for general consensus purpose. Currently, it only
 takes FASTA input. For shorter read sequences, one might need to adjust the
 blasr alignment parameters to get the alignment string properly.
 .
 The code and the underlying graphical data structure have been used for some
 algorithm development prototyping including phasing reads and pre-assembly.

pbdagcon-dbgsym: debug symbols for pbdagcon