Ubuntu
pftools package

pftools 3.2.11-1 source package in Ubuntu

Changelog

pftools (3.2.11-1) unstable; urgency=medium

  * Use Github tags instead of releases
  * New upstream version
  * Add missing build dependency on dh addon.

 -- Andreas Tille <email address hidden>  Tue, 25 Jan 2022 10:01:51 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any-amd64
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Builds

Jammy: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
pftools_3.2.11-1.dsc 2.0 KiB 8a3f327624133fcf08d67be7db6b710e191290e5ab32b9c38575c7d4b2627168
pftools_3.2.11.orig.tar.gz 42.0 MiB b45381584c57bc7c3ac6544f8654752095a5c04fd8242ab270b1d8cdce40d94a
pftools_3.2.11-1.debian.tar.xz 6.6 KiB 09a4ed5207c2d750a72a154979c06d117f6b0e200740fba05bb63e5ee7797d61

Available diffs

No changes file available.

Binary packages built by this source

pftools: build and search protein and DNA generalized profiles

 The pftools package contains all the software necessary to build protein
 and DNA generalized profiles and use them to scan and align sequences,
 and search databases.
 .
 File formats used by the pftools
  * Generalized profiles format and syntax.
  * The multiple sequence alignment format (PSA).
  * The extended header multiple sequence alignment format (XPSA).
 .
 Programs to build generalized profiles
  pfmake
    Build a profile from a multiple sequence alignment.
  pfscale
    Fit parameters of an extreme-value distribution to a profile score list.
  pfw
    Weight sequences of a multiple sequence alignment to correct for
    sampling bias.
 .
 Programs to search with generalized profiles
  pfsearch / pfsearchV3
    Search a protein or DNA sequence library for sequence segments matching
    a profile (V3 is the new version of this tool).
  pfscan
    Scan a protein or DNA sequence with a profile library
 .
 Conversion programs
  psa2msa
    Reformat PSA file to Pearson/Fasta multiple sequence alignment file.
  ptof
    Convert a protein profile into a frame-search profile to search DNA
    sequences. To be used with 2ft.
  2ft
    Converts both strands of DNA into so-called interleaved
    frame-translated DNA sequences to search with protein profiles. To be
    used with ptof.
  6ft
    Translates all six reading frames of a double-stranded DNA sequence
    into individual protein sequences.
  pfgtop
    Convert a profile in GCG format into PROSITE format.
  pfhtop
    Convert a HMMER1 ASCII-formatted HMM into an equivalent PROSITE profile.
  ptoh
    Converts a generalized profile into an approximately equivalent HMM
    profile in HMMER1 format (can be read by the hmmconvert program from
    the HMMER2 package).

pftools-dbgsym: debug symbols for pftools