phyml 3:3.3.20190909-1 source package in Ubuntu


phyml (3:3.3.20190909-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.4.1
  * Reported autogenerated files in archive to upstream

 -- Steffen Moeller <email address hidden>  Wed, 06 Nov 2019 21:46:04 +0100

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Uploaded by:
Debian Med on 2019-11-07
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release on 2019-11-07 universe science


File Size SHA-256 Checksum
phyml_3.3.20190909-1.dsc 2.0 KiB 496db95015519e22134d8a6f6e3eadfe82f9e6674f8fd2c9c5db303f0b8b10bd
phyml_3.3.20190909.orig.tar.gz 2.1 MiB f3afd6d5332cd98298736b3c6df63d751fa74388a0e972ec08f63a032d5e6a9c
phyml_3.3.20190909-1.debian.tar.xz 16.8 KiB cf31d9cd6b8d8492a10ee5680485c1acac275a12ddc4c6d7363c95a8f847fb5d

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Binary packages built by this source

phyml: Phylogenetic estimation using Maximum Likelihood

 PhyML is a software that estimates maximum likelihood phylogenies from
 alignments of nucleotide or amino acid sequences. It provides a wide
 range of options that were designed to facilitate standard phylogenetic
 analyses. The main strengths of PhyML lies in the large number of
 substitution models coupled to various options to search the space of
 phylogenetic tree topologies, going from very fast and efficient methods
 to slower but generally more accurate approaches. It also implements
 two methods to evaluate branch supports in a sound statistical framework
 (the non-parametric bootstrap and the approximate likelihood ratio test).
 PhyML was designed to process moderate to large data sets. In theory,
 alignments with up to 4,000 sequences 2,000,000 character-long can
 be analyzed. In practice however, the amount of memory required to process
 a data set is proportional of the product of the number of sequences by their
 length. Hence, a large number of sequences can only be processed provided
 that they are short. Also, PhyML can handle long sequences provided that
 they are not numerous. With most standard personal computers, the “comfort
 zone” for PhyML generally lies around 3 to 500 sequences less than 2,000
 character long.
 This package also includes PhyTime.

phyml-dbgsym: debug symbols for phyml