Ubuntu
physamp package

physamp 1.1.0-1 source package in Ubuntu

Changelog

physamp (1.1.0-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * shortened single line description
  * debian/upstream/metadata:
    - reference to paper
    - stated that there are no entries in catalogs

  [ Julien Y. Dutheil ]
  * New upstream version.
  * Compiles with -DCMAKE_BUILD_TYPE=RelWithDebInfo to generate debug info
    (lintian warning)
  * Point Vcs-fields to salsa.debian.org
  * Standards-Version: 4.1.4

  [ Andreas Tille ]
  * debhelper 11

 -- Julien Dutheil <email address hidden>  Wed, 18 Apr 2018 16:28:13 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release universe misc

Downloads

File Size SHA-256 Checksum
physamp_1.1.0-1.dsc 2.0 KiB d913fac826f4832e338bc185710ae4aedadde12e14c135a93d5cc4d6bbdd51dd
physamp_1.1.0.orig.tar.gz 236.2 KiB 0c687e7f46d6d5732a3ad6f029a0169667921101294a9fb5efaae9adfc397ae8
physamp_1.1.0-1.debian.tar.xz 3.5 KiB f4b963be98b408f5afacbf1f34c09b7dc809d7754f2cf7a0cce6962ed6bbaeba

No changes file available.

Binary packages built by this source

physamp: sample sequence alignment corresponding to phylogeny

 The PhySamp package currently contains two programs: bppphysamp, which
 samples sequences according to their similarity, and bppalnoptim, which
 samples a sequence alignment by removing sequences in order to maximize
 the number of sites suitable for a given analysis. The bppalnoptim
 program has three running modes:
  * Interactive: the user will be iteratively proposed a set of choices
    for sequence removal, with their corresponding site gains. The
    procedure stops when the user does not want to remove more sequences,
    and the resulting filtered alignment is written.
  * Automatic: the user enters an a priori criterion for stopping
    the filtering procedure (for instance a minimum number of
    sequences to keep).
  * Diagnostic: this mode allows one to plot the trade-off curve, by
    showing the site gain as a function of the number of removed
    sequences.

physamp-dbgsym: debug symbols for physamp