Ubuntu
physamp package

physamp 1.1.0-4 source package in Ubuntu

Changelog

physamp (1.1.0-4) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <email address hidden>  Thu, 24 Nov 2022 18:05:20 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
physamp_1.1.0-4.dsc 2.0 KiB bc04ac4d5c382a2820284927d8f753946adb013b5ffca8088897f137d15b4bcd
physamp_1.1.0.orig.tar.gz 236.2 KiB 0c687e7f46d6d5732a3ad6f029a0169667921101294a9fb5efaae9adfc397ae8
physamp_1.1.0-4.debian.tar.xz 3.8 KiB 1ab197f75fc0052aa85218efbfcbf383900864f26cd7f3efed5f6805ef981197

Available diffs

No changes file available.

Binary packages built by this source

physamp: sample sequence alignment corresponding to phylogeny

 The PhySamp package currently contains two programs: bppphysamp, which
 samples sequences according to their similarity, and bppalnoptim, which
 samples a sequence alignment by removing sequences in order to maximize
 the number of sites suitable for a given analysis. The bppalnoptim
 program has three running modes:
  * Interactive: the user will be iteratively proposed a set of choices
    for sequence removal, with their corresponding site gains. The
    procedure stops when the user does not want to remove more sequences,
    and the resulting filtered alignment is written.
  * Automatic: the user enters an a priori criterion for stopping
    the filtering procedure (for instance a minimum number of
    sequences to keep).
  * Diagnostic: this mode allows one to plot the trade-off curve, by
    showing the site gain as a function of the number of removed
    sequences.

physamp-dbgsym: debug symbols for physamp