Ubuntu
physamp package

physamp 1.1.0-4build1 source package in Ubuntu

Changelog

physamp (1.1.0-4build1) noble; urgency=medium

  * No-change rebuild against libbpp-seq12t64

 -- Steve Langasek <email address hidden>  Tue, 19 Mar 2024 06:06:14 +0000

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Uploaded by:
Steve Langasek
Uploaded to:
Noble
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
physamp_1.1.0.orig.tar.gz 236.2 KiB 0c687e7f46d6d5732a3ad6f029a0169667921101294a9fb5efaae9adfc397ae8
physamp_1.1.0-4build1.debian.tar.xz 3.9 KiB db378af694735644a26799e15be31806d5c3247a440a734a9a22e6d87114e98e
physamp_1.1.0-4build1.dsc 2.1 KiB 632845422a63dcee05498edbe4622f3b2797e55f12777a302f3ff7f66ef5ff77

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Binary packages built by this source

physamp: sample sequence alignment corresponding to phylogeny

 The PhySamp package currently contains two programs: bppphysamp, which
 samples sequences according to their similarity, and bppalnoptim, which
 samples a sequence alignment by removing sequences in order to maximize
 the number of sites suitable for a given analysis. The bppalnoptim
 program has three running modes:
  * Interactive: the user will be iteratively proposed a set of choices
    for sequence removal, with their corresponding site gains. The
    procedure stops when the user does not want to remove more sequences,
    and the resulting filtered alignment is written.
  * Automatic: the user enters an a priori criterion for stopping
    the filtering procedure (for instance a minimum number of
    sequences to keep).
  * Diagnostic: this mode allows one to plot the trade-off curve, by
    showing the site gain as a function of the number of removed
    sequences.

physamp-dbgsym: debug symbols for physamp