Ubuntu
physamp package

physamp 1.1.0-4build2 source package in Ubuntu

Changelog

physamp (1.1.0-4build2) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- William Grant <email address hidden>  Mon, 01 Apr 2024 18:12:14 +1100

Upload details

Uploaded by:
William Grant
Uploaded to:
Noble
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc

Downloads

File Size SHA-256 Checksum
physamp_1.1.0.orig.tar.gz 236.2 KiB 0c687e7f46d6d5732a3ad6f029a0169667921101294a9fb5efaae9adfc397ae8
physamp_1.1.0-4build2.debian.tar.xz 4.0 KiB fedaa3af4a4cce1aa7b60e22c4dc1753dad121a5893d723c574551ee19ace8f8
physamp_1.1.0-4build2.dsc 2.1 KiB fa6ae0f80ba2301b5c31ed3e8f1a028468c497bacad0776e5f14d5d1bf10f446

Available diffs

View changes file

Binary packages built by this source

physamp: sample sequence alignment corresponding to phylogeny

 The PhySamp package currently contains two programs: bppphysamp, which
 samples sequences according to their similarity, and bppalnoptim, which
 samples a sequence alignment by removing sequences in order to maximize
 the number of sites suitable for a given analysis. The bppalnoptim
 program has three running modes:
  * Interactive: the user will be iteratively proposed a set of choices
    for sequence removal, with their corresponding site gains. The
    procedure stops when the user does not want to remove more sequences,
    and the resulting filtered alignment is written.
  * Automatic: the user enters an a priori criterion for stopping
    the filtering procedure (for instance a minimum number of
    sequences to keep).
  * Diagnostic: this mode allows one to plot the trade-off curve, by
    showing the site gain as a function of the number of removed
    sequences.

physamp-dbgsym: debug symbols for physamp