Ubuntu
presto package

presto 0.7.2-1 source package in Ubuntu

Changelog

presto (0.7.2-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * d/presto.lintian-overrides: Update lintian override format on lines 3-16
  * d/presto.examples: Install examples folder
  * d/control: Add to Depends and Build-Depends and replace testsuite with
    autopkgtest-pkg-pybuild to run upstream tests
  * d/control: Switch Architecture from all to any for python3-presto due to
    'vsearch' (architecture specific dependency for ClusterSets)
  * d/rules: Copy bin dir to build dir for testing and remove overrides for
    dh_auto_clean and dh_installchangelogs
  * d/rules: Remove test file for architecture specific dependency (vsearch)

 -- Lance Lin <email address hidden>  Mon, 19 Feb 2024 19:34:26 +0700

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc

Downloads

File Size SHA-256 Checksum
presto_0.7.2-1.dsc 2.2 KiB 9d15613574a6f2b8e3ef5b0f303541b13684d7a3c0f2db9b163a924673409045
presto_0.7.2.orig.tar.xz 353.1 KiB 2eb8874e93df323a6fdf8a6e198f7795d710493d6a94d25d650a8ce0aa22c37b
presto_0.7.2-1.debian.tar.xz 20.3 KiB 448a6926319a56a21569fc927e45b1708549ef27b7542ebfa345e0d8aab698d2

Available diffs

No changes file available.

Binary packages built by this source

presto: toolkit for processing B and T cell sequences

 pRESTO is a toolkit for processing raw reads from high-throughput
 sequencing of B cell and T cell repertoires.
 .
 Dramatic improvements in high-throughput sequencing technologies now
 enable large-scale characterization of lymphocyte repertoires, defined
 as the collection of trans-membrane antigen-receptor proteins located on
 the surface of B cells and T cells. The REpertoire Sequencing TOolkit
 (pRESTO) is composed of a suite of utilities to handle all stages
 of sequence processing prior to germline segment assignment. pRESTO
 is designed to handle either single reads or paired-end reads. It
 includes features for quality control, primer masking, annotation of
 reads with sequence embedded barcodes, generation of unique molecular
 identifier (UMI) consensus sequences, assembly of paired-end reads and
 identification of duplicate sequences. Numerous options for sequence
 sorting, sampling and conversion operations are also included.

python3-presto: toolkit for processing B and T cell sequences (Python3 module)

 pRESTO is a toolkit for processing raw reads from high-throughput
 sequencing of B cell and T cell repertoires.
 .
 Dramatic improvements in high-throughput sequencing technologies now
 enable large-scale characterization of lymphocyte repertoires, defined
 as the collection of trans-membrane antigen-receptor proteins located on
 the surface of B cells and T cells. The REpertoire Sequencing TOolkit
 (pRESTO) is composed of a suite of utilities to handle all stages
 of sequence processing prior to germline segment assignment. pRESTO
 is designed to handle either single reads or paired-end reads. It
 includes features for quality control, primer masking, annotation of
 reads with sequence embedded barcodes, generation of unique molecular
 identifier (UMI) consensus sequences, assembly of paired-end reads and
 identification of duplicate sequences. Numerous options for sequence
 sorting, sampling and conversion operations are also included.
 .
 This package provides the presto Python3 module.