Change log for primer3 package in Ubuntu

primer3 (2.6.1-4) unstable; urgency=medium

  * Team upload.

  [ Lukas Märdian ]
  * d/t/run-unit-test: fix autopkgtest sed commands on s390x.
    (Closes: #1023823)

 -- Étienne Mollier <email address hidden>  Sun, 13 Nov 2022 11:49:48 +0100

Available diffs

• diff from 2.6.1-2ubuntu2 (in Ubuntu) to 2.6.1-4 (6.1 KiB)

primer3 (2.6.1-2ubuntu2) lunar; urgency=medium

  * d/t/run-unit-test: fix broken attempts to selectively exclude tests on
    big-endian architectures.

 -- Lukas Märdian <email address hidden>  Thu, 10 Nov 2022 16:34:53 +0100

Available diffs

• diff from 2.5.0-1 (in Debian) to 2.6.1-2ubuntu2 (1.2 MiB)
• diff from 2.6.1-2ubuntu2~ppa0 (in ~slyon/ubuntu/testing) to 2.6.1-2ubuntu2 (4.2 KiB)
• diff from 2.6.1-2ubuntu1 to 2.6.1-2ubuntu2 (4.2 KiB)

primer3 (2.6.1-2ubuntu1) kinetic; urgency=medium

  * debian/rules: fix broken attempts to selectively exclude tests on
    big-endian architectures.

 -- Steve Langasek <email address hidden>  Sat, 09 Jul 2022 05:20:30 +0000

Available diffs

• diff from 2.6.1-2 (in Debian) to 2.6.1-2ubuntu1 (836 bytes)

primer3 (2.6.1-2) unstable; urgency=medium

  * Run dh_auto_test with --no-parallel

 -- Andreas Tille <email address hidden>  Sat, 19 Feb 2022 17:57:05 +0100

Available diffs

• diff from 2.6.1-1 to 2.6.1-2 (467 bytes)

primer3 (2.6.1-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <email address hidden>  Thu, 17 Feb 2022 15:38:18 +0100

Available diffs

• diff from 2.5.0-1 to 2.6.1-1 (1.2 MiB)

primer3 (2.5.0-1) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)
  * Apply multi-arch hints.
    + primer3-examples: Add Multi-Arch: foreign.
  * Fix PREFIX

 -- Andreas Tille <email address hidden>  Fri, 15 Oct 2021 15:20:35 +0200

Available diffs

• diff from 2.4.0-4 to 2.5.0-1 (280.1 KiB)

primer3 (2.4.0-4) unstable; urgency=medium

  * Team upload
  * Fixup syntax skip for big endian platforms.

 -- Gianfranco Costamagna <email address hidden>  Thu, 02 Jul 2020 22:12:20 +0200

Available diffs

• diff from 2.4.0-3ubuntu2 (in Ubuntu) to 2.4.0-4 (316 bytes)

primer3 (2.4.0-3ubuntu2) groovy; urgency=medium

  * Fixup syntax

 -- Gianfranco Costamagna <email address hidden>  Thu, 02 Jul 2020 22:12:20 +0200

Available diffs

• diff from 2.4.0-2ubuntu2 to 2.4.0-3ubuntu2 (2.7 KiB)
• diff from 2.4.0-3ubuntu1 to 2.4.0-3ubuntu2 (613 bytes)

primer3 (2.4.0-3ubuntu1) groovy; urgency=medium

  * Fixup syntax

 -- Gianfranco Costamagna <email address hidden>  Thu, 02 Jul 2020 22:12:20 +0200

Available diffs

• diff from 2.4.0-3 (in Debian) to 2.4.0-3ubuntu1 (455 bytes)

primer3 (2.4.0-3) unstable; urgency=medium

  [ Gianfranco Costamagna ]
  * Also skip autopkgtests that fail on big endian (see: 890993)
    Closes: #962190

  [ Andreas Tille ]
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Secure URI in copyright format (routine-update)
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-
    update)
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Trim trailing whitespace.
  * debian/copyright: use spaces rather than tabs to start continuation lines.
  * Set fields Upstream-Name, Upstream-Contact in debian/copyright.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Remove obsolete fields Contact, Name from debian/upstream/metadata (already
    present in machine-readable debian/copyright).
  * Fix day-of-week for changelog entry 0.9-0.2.

 -- Andreas Tille <email address hidden>  Thu, 02 Jul 2020 08:10:35 +0200

Available diffs

• diff from 2.4.0-2ubuntu2 (in Ubuntu) to 2.4.0-3 (3.0 KiB)

primer3 (2.4.0-2ubuntu2) groovy; urgency=medium

  * Also skip autopkgtests that fail on big endian (see: 890993)

 -- Gianfranco Costamagna <email address hidden>  Thu, 04 Jun 2020 11:47:04 +0200

Available diffs

• diff from 2.4.0-2 (in Debian) to 2.4.0-2ubuntu2 (991 bytes)
• diff from 2.4.0-2ubuntu1 to 2.4.0-2ubuntu2 (775 bytes)

primer3 (2.4.0-2ubuntu1) groovy; urgency=medium

  * Also skip autopkgtests that fail on big endian (see: 890993)

 -- Gianfranco Costamagna <email address hidden>  Thu, 04 Jun 2020 11:47:04 +0200

Available diffs

• diff from 2.4.0-2build1 to 2.4.0-2ubuntu1 (968 bytes)

primer3 (2.4.0-2build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Sun, 22 Mar 2020 16:54:38 +0100

Available diffs

• diff from 2.4.0-2 (in Debian) to 2.4.0-2build1 (320 bytes)

primer3 (2.4.0-2) unstable; urgency=medium

  [ Liubov Chuprikova ]
  * Team upload.
  * Skip tests that fail on big endian
    Closes: #890993
  * Added d/README.source with explanation why some tests are skipped
  * debian/patches/p3test_fix_exit_status.patch: Fix test to show correct exit
    status

  [ Andreas Tille ]
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.1.4

 -- Liubov Chuprikova <email address hidden>  Mon, 28 May 2018 13:44:30 +0000

Available diffs

• diff from 2.4.0-1ubuntu2 (in Ubuntu) to 2.4.0-2 (2.4 KiB)

primer3 (2.4.0-1ubuntu2) bionic; urgency=medium

  * No-change rebuild.

 -- Matthias Klose <email address hidden>  Tue, 10 Apr 2018 20:23:03 +0200

Available diffs

• diff from 2.3.7-4 (in Debian) to 2.4.0-1ubuntu2 (207.1 KiB)
• diff from 2.4.0-1ubuntu1 to 2.4.0-1ubuntu2 (308 bytes)

primer3 (2.4.0-1ubuntu1) bionic; urgency=medium

  * Allow stderr output from the autopkgtests.

 -- Steve Langasek <email address hidden>  Mon, 09 Apr 2018 23:21:51 -0700

Available diffs

• diff from 2.4.0-1 (in Debian) to 2.4.0-1ubuntu1 (592 bytes)

primer3 (2.4.0-1) unstable; urgency=medium

  * New upstream version
  * Secure URI in watch file
  * Standards-Version: 4.1.3
  * debhelper 11

 -- Andreas Tille <email address hidden>  Wed, 21 Feb 2018 09:21:42 +0100

primer3 (2.3.7-4) unstable; urgency=medium

  * Fix build with gcc-7
    Closes: #853621
  * Standards-Version: 4.1.0 (no changes needed)
  * d/rules: use DEB_SOURCE
  * hardening=+all

 -- Andreas Tille <email address hidden>  Sat, 26 Aug 2017 06:55:03 +0200

Available diffs

• diff from 2.3.7-3 to 2.3.7-4 (1.4 KiB)

primer3 (2.3.7-3) unstable; urgency=medium

  [ Andreas Tille ]
  * debhelper 10
  * d/watch: version=4

  [ Helmut Grohne ]
  * Fix FTCBFS: Pass CXX as CPP (Closes: #851230)

 -- Andreas Tille <email address hidden>  Fri, 13 Jan 2017 08:32:57 +0100

Available diffs

• diff from 2.3.7-2 to 2.3.7-3 (736 bytes)

primer3 (2.3.7-2) unstable; urgency=medium

  * Team Upload
  [ Andreas Tille ]
  * Moved packaging from SVN to Git
  * cme fix dpkg-control
  * better hardening
  * split example data for test into separate arch all package
  * add lintian override for empty directories

  [ Canberk Koç ]
  * Autopkgtest added
  * debian/rules:
    - added dh_clean to override_dh_auto_test section
    - sed perl interpreter path
  
 -- Canberk Koç <email address hidden>  Mon, 27 Jun 2016 04:28:31 +0300

Available diffs

• diff from 2.3.7-1 to 2.3.7-2 (2.2 KiB)

primer3 (2.3.7-1) unstable; urgency=medium

  * New upstream version
  * Moved debian/upstream to debian/upstream/metadata
  * cme fix dpkg-control

 -- Andreas Tille <email address hidden>  Thu, 10 Mar 2016 18:56:25 +0100

Available diffs

• diff from 2.3.6-1 to 2.3.7-1 (249.3 KiB)

primer3 (2.3.6-1) unstable; urgency=low


  [ Charles Plessy ]
  * New upstream release.
  * Install configuration files in /etc (first step to fix bug 702693).
  * Normalised debian/control with config-model-edit.
  * Use canonical VCS URLs.

  [ Andreas Tille ]
  * Fix watch file
  * replace cdbs by dh
  * debian/patches/hardening.patch: Propagate hardening options
  * Standards-Version: 3.9.5 (no changes needed)
  * debian/patches/primer_thermodynamic_parameters_path_2_etc.patch:
    Make sure config files will be searched for in /etc/primer3_config/
    instead of /opt/primer3_config/
    Closes: #702693
  * Verified that new upstream
    Closes: #716151, #716213 
  * New executable: ntthal (including manpage)
  * Removed *.xml variants of manpages to reduce redundancy

 -- Andreas Tille <email address hidden>  Thu, 19 Dec 2013 09:58:19 +0100

Available diffs

• diff from 2.3.5-1 to 2.3.6-1 (48.6 KiB)

primer3 (2.3.5-1) unstable; urgency=low


  New upstream release.

  [ Andreas Tille ]
  * debian/upstream:
     - Remove duplicated entry for PMID
     - Added Volume, fixed Number
     - Added URL+eprint
  * debian/control:
    - Removed DM-Upload-Allowed
    - Standards-Version: 3.9.4 (no changes needed)
  * debhelper 9 (control+compat)
  * debian/copyright: PD License should be avoided - bumped packaging
    to same license as program itself

 -- Andreas Tille <email address hidden>  Tue, 05 Feb 2013 10:11:37 +0100

Available diffs

• diff from 2.3.2-1 to 2.3.5-1 (1.1 MiB)

primer3 (2.3.2-1) unstable; urgency=low


  * New upstream release changing some default values.
  * Refreshed debian/copyright to machine-readable format version 1.0.
    Note that the license of Primer3 version 2.x changed to the GPLv2 or higher.
  * Spellchecked manual pages (Closes: #650477, thanks to A. Costa).
  * Using Debhelper 8 (debian/control, debian/compat).
  * Renamed debian/README.Debian debian/README.test as it is all about tests.
  * Conforms to Policy 3.9.3 (debian/control, no other changes needed).

 -- Charles Plessy <email address hidden>  Thu, 22 Mar 2012 13:35:35 +0900

Available diffs

• diff from 2.2.3-1 (in Ubuntu) to 2.3.2-1 (327.8 KiB)

primer3 (2.2.3-1) unstable; urgency=low

  * New upstream version
  * debian/primer3.docs: s/README.txt/primer3_manual.htm/
  * debian/compat: 7
  * debian/control:
    - Build-Depends: debhelper (>= 7)
    - Standards-Version: 3.9.1 (no changes needed
  * debian/source/format: 3.0 (quilt)
  * debian/README.source
  * debian/primer3.doc-base

Available diffs

• diff from 1.1.4-1 to 2.2.3-1 (2.4 MiB)

primer3 (1.1.4-1) unstable; urgency=low

  * New upstream release (No changes on Linux systems).
  * Updated my email address (debian/control, debian/copyright, manpages).
  * Updated the manpages:
    - using DocBook 4.5
    - incremented Primer3 version to 1.1.4

 -- Ubuntu Archive Auto-Sync <email address hidden>   Sat,  10 May 2008 12:59:32 +0100

primer3 (1.1.3-1) unstable; urgency=low

  [ Charles Plessy ]
  * New upstream version:
    - 1.1.3: Corrected static buffer overflow errors in
      boulder_print_pairs() and boulder_print_oligos() in primer3_main.c.
    - 1.1.2: Updates to dpal.c so that no error forces an exit.
      Adpatation in primer3_main.c and ntdpal_main.c to
        updated error handling in dpal().
      Arranged for primer3_main.c align() to check for
        and circumvent local alignments to "targets" < 3 nucleotides
        long, and added tests for this condition.
      Comment and code readability updates in dpal.h and dpal.c
  * Moved the Homepage: field out from the package's description.
  * debian/control: updated Steffen's email address.
  * debian/*.1.xml: corrected the headers of the sources of manpages.
  * debian/rules: converted to CDBS.

  [ David Paleino ]
  * debian/ntdpal.1, debian/primer3_core.1 and debian/oligotm.1
    added - manpages are statically built now
  * debian/control:
    - B-D updated
    - added myself to Uploaders
  * Updated to Standards-Version 3.7.3 (no changes needed)

 -- Ubuntu Archive Auto-Sync <email address hidden>   Fri,  02 May 2008 02:23:08 +0100

primer3 (1.1.1-1) unstable; urgency=low

  * New upstream release.
  * Enhances: emboss because EMBOSS has a wrapper for primer3_core.
  * Add Subversion repository URL to debian/control.
  * Updated the manpages

primer3 (1.0b-1) unstable; urgency=low

  * Initial release. (Closes: #241235)
  * New upstream version released under a revised BSD licence.
  * Swiching to collaborative maintainance: Maintainer is a mailing-list,
    Uploaders are real people.
  * Using debhelper v5 and conforming to policy 3.7.2.
  * Relicencing the manpage of Primer3 (thanks to Steffen Moeller), adding one
    for ntdpal and oligotm.
  * Extensive tests during bulding, except on slow architectures.