Ubuntu
prodigal package

prodigal 1:2.6.1-1~ubuntu14.04.1 source package in Ubuntu

Changelog

prodigal (1:2.6.1-1~ubuntu14.04.1) trusty-backports; urgency=medium

  * No-change backport to trusty (LP: #1415175)
 -- Felix Geyer <email address hidden>   Mon, 23 Feb 2015 19:15:47 +0100

Upload details

Uploaded by:
Felix Geyer
Uploaded to:
Trusty
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Trusty backports universe science

Downloads

File Size SHA-256 Checksum
prodigal_2.6.1.orig.tar.gz 596.6 KiB 922a8749bda9fa150b5cf409c3c7321a032f38e4663606eb877b661a0baae22b
prodigal_2.6.1-1~ubuntu14.04.1.debian.tar.xz 4.2 KiB 2c5f8a65f532e38959b3c44b999539694b5e680f2706715dfb2ad3f19db79d32
prodigal_2.6.1-1~ubuntu14.04.1.dsc 2.0 KiB 46b32cf411ad65c153f2ae739f7fffde57ab698b7416569bf9835641bb80bc01

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Binary packages built by this source

prodigal: Microbial (bacterial and archaeal) gene finding program

 Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a
 microbial (bacterial and archaeal) gene finding program developed at
 Oak Ridge National Laboratory and the University of Tennessee.
 Key features of Prodigal include:
 .
 Speed: Prodigal is an extremely fast gene recognition tool
 (written in very vanilla C). It can analyze an entire microbial genome
 in 30 seconds or less.
 .
 Accuracy: Prodigal is a highly accurate gene finder.
 It correctly locates the 3' end of every gene in the experimentally verified
 Ecogene data set (except those containing introns).
 It possesses a very sophisticated ribosomal binding site scoring system that
 enables it to locate the translation initiation site with great accuracy
 (96% of the 5' ends in the Ecogene data set are located correctly).
 .
 Specificity: Prodigal's false positive rate compares favorably with other
 gene identification programs, and usually falls under 5%.
 .
 GC-Content Indifferent: Prodigal performs well even in high GC genomes,
 with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated
 annotations.
 .
 Metagenomic Version: Prodigal can run in metagenomic mode and analyze
 sequences even when the organism is unknown.
 .
 Ease of Use: Prodigal can be run in one step on a single genomic sequence
 or on a draft genome containing many sequences. It does not need to be
 supplied with any knowledge of the organism, as it learns all the properties
 it needs to on its own.