pyfastx 2.0.1-1build1 source package in Ubuntu

Changelog

pyfastx (2.0.1-1build1) noble; urgency=medium

  * No-change rebuild to build with Python 3.12.

 -- Matthias Klose <email address hidden>  Sun, 19 Nov 2023 11:54:08 +0100

Upload details

Uploaded by:
Matthias Klose
Uploaded to:
Noble
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
pyfastx_2.0.1.orig.tar.xz 224.9 KiB adb1405f1f4d2905b4d1de7d0823e16be2f40a64c3ea8c9361089fa8135efafe
pyfastx_2.0.1-1build1.debian.tar.xz 32.6 KiB 298e33800aea34317b6e7ad69d275ab911c4aaddcc1443130a2fe5bb23f5b4f1
pyfastx_2.0.1-1build1.dsc 2.1 KiB db73305fd3b29fb36dabc9084af8e067002bd7b26ebef21496e10f41d17ff042

View changes file

Binary packages built by this source

pyfastx: fast random access to sequences from FASTA/Q file - command

 The pyfastx is a lightweight Python C extension that enables users to randomly
 access to sequences from plain and gzipped FASTA/Q files. This module aims to
 provide simple APIs for users to extract sequence from FASTA and reads from
 FASTQ by identifier and index number. The pyfastx will build indexes stored in
 a sqlite3 database file for random access to avoid consuming excessive amount
 of memory. In addition, the pyfastx can parse standard (sequence is spread
 into multiple lines with same length) and nonstandard (sequence is spread into
 one or more lines with different length) FASTA format.
 .
 It features:
 .
  * a single file for the Python extension;
  * lightweight, memory efficient FASTA/Q file parsing;
  * fast random access to sequences from gzipped FASTA/Q file;
  * sequences reading from FASTA file line by line;
  * N50 and L50 calculation of sequences in FASTA file;
  * GC content and nucleotides composition calculation;
  * reverse, complement and antisense sequences extraction;
  * excellent compatibility: support for parsing nonstandard FASTA file;
  * support for FASTQ quality score conversion;
  * a command line interface for splitting FASTA/Q file.
 .
 This package provides the command line interface.

python3-pyfastx: fast random access to sequences from FASTA/Q file - python3 module

 The pyfastx is a lightweight Python C extension that enables users to randomly
 access to sequences from plain and gzipped FASTA/Q files. This module aims to
 provide simple APIs for users to extract sequence from FASTA and reads from
 FASTQ by identifier and index number. The pyfastx will build indexes stored in
 a sqlite3 database file for random access to avoid consuming excessive amount
 of memory. In addition, the pyfastx can parse standard (sequence is spread
 into multiple lines with same length) and nonstandard (sequence is spread into
 one or more lines with different length) FASTA format.
 .
 It features:
 .
  * a single file for the Python extension;
  * lightweight, memory efficient FASTA/Q file parsing;
  * fast random access to sequences from gzipped FASTA/Q file;
  * sequences reading from FASTA file line by line;
  * N50 and L50 calculation of sequences in FASTA file;
  * GC content and nucleotides composition calculation;
  * reverse, complement and antisense sequences extraction;
  * excellent compatibility: support for parsing nonstandard FASTA file;
  * support for FASTQ quality score conversion;
  * a command line interface for splitting FASTA/Q file.
 .
 This package provides the python3 module.

python3-pyfastx-dbgsym: debug symbols for python3-pyfastx