Change log for pymol package in Ubuntu

pymol (2.5.0+dfsg-1build6) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- William Grant <email address hidden>  Mon, 01 Apr 2024 18:18:23 +1100

Available diffs

• diff from 2.5.0+dfsg-1build5 to 2.5.0+dfsg-1build6 (319 bytes)

pymol (2.5.0+dfsg-1build5) noble; urgency=medium

  * No-change rebuild against libpng16-16t64

 -- Steve Langasek <email address hidden>  Thu, 29 Feb 2024 07:53:24 +0000

Available diffs

• diff from 2.5.0+dfsg-1build4 to 2.5.0+dfsg-1build5 (523 bytes)

pymol (2.5.0+dfsg-1build4) noble; urgency=medium

  * No-change rebuild to build with python3.12 as supported.

 -- Matthias Klose <email address hidden>  Thu, 02 Nov 2023 09:24:51 +0100

Available diffs

• diff from 2.5.0+dfsg-1build3 to 2.5.0+dfsg-1build4 (334 bytes)

pymol (2.5.0+dfsg-1build3) lunar; urgency=medium

  * No-change rebuild with Python 3.11 only

 -- Graham Inggs <email address hidden>  Mon, 20 Mar 2023 05:54:58 +0000

Available diffs

• diff from 2.5.0+dfsg-1build2 to 2.5.0+dfsg-1build3 (312 bytes)

pymol (2.5.0+dfsg-1build2) lunar; urgency=medium

  * No-change rebuild with Python 3.11 as supported

 -- Graham Inggs <email address hidden>  Thu, 03 Nov 2022 17:29:05 +0000

Available diffs

• diff from 2.5.0+dfsg-1build1 to 2.5.0+dfsg-1build2 (319 bytes)

pymol (2.5.0+dfsg-1build1) jammy; urgency=medium

  * No-change rebuild with Python 3.10 only

 -- Graham Inggs <email address hidden>  Wed, 16 Mar 2022 22:58:28 +0000

Available diffs

• diff from 2.5.0+dfsg-1 (in Debian) to 2.5.0+dfsg-1build1 (313 bytes)

pymol (2.5.0+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Remove trailing whitespace in debian/copyright (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * No tab in license text (routine-update)
  * Use secure URI in Homepage field.
  * Remove obsolete field Name from debian/upstream/metadata (already present in
    machine-readable debian/copyright).
  * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
  * Apply multi-arch hints.
    + pymol-data: Add Multi-Arch: foreign.
  * Replace imp by importlib in wrapper script
    Closes: #929700
  * Deactivate debian/patches/02_test-suite.patch since it is unused
  * There is no need to recreate debian/pymol.launch per package build time
    since we now stick to Python3
  * Skip test importing.py
  * Sort testscript and print command before execution to simplify debugging
    of autopkgtest
  * Do not try to run upstream build-time testscript which was removed upstream
    (neither at build time nor in autopkgtest)
  * Exclude test /usr/share/pymol/examples/devel/importing.py which has some
    issue for the moment.

 -- Andreas Tille <email address hidden>  Wed, 15 Dec 2021 16:51:43 +0100

Available diffs

• diff from 2.4.0+dfsg-3build2 (in Ubuntu) to 2.5.0+dfsg-1 (750.1 KiB)

pymol (2.4.0+dfsg-3build2) jammy; urgency=medium

  * No-change rebuild against libglew2.2

 -- Graham Inggs <email address hidden>  Tue, 26 Oct 2021 13:33:07 +0000

Available diffs

• diff from 2.4.0+dfsg-3 (in Debian) to 2.4.0+dfsg-3build2 (361 bytes)
• diff from 2.4.0+dfsg-3build1 to 2.4.0+dfsg-3build2 (312 bytes)

pymol (2.4.0+dfsg-3build1) jammy; urgency=medium

  * No-change rebuild to add python3.10.

 -- Matthias Klose <email address hidden>  Mon, 18 Oct 2021 00:20:39 +0200

Available diffs

• diff from 2.4.0+dfsg-3 (in Debian) to 2.4.0+dfsg-3build1 (311 bytes)

pymol (2.4.0+dfsg-3) unstable; urgency=medium

  * Team upload

  [ Matthias Klose ]
  * Enable building with pie again (Closes: #986253)

  [ Sebastian Ramacher ]
  * Replace libglew1.5-dev with libglew-dev (Closes: #995699)

 -- Graham Inggs <email address hidden>  Wed, 06 Oct 2021 08:18:01 +0000

Available diffs

• diff from 2.4.0+dfsg-1ubuntu1 (in Ubuntu) to 2.4.0+dfsg-3 (1.1 KiB)

pymol (2.4.0+dfsg-1ubuntu1) hirsute; urgency=medium

  * Enable building with pie. That was disabled in 2016, but seems
    to build now.

 -- Matthias Klose <email address hidden>  Thu, 01 Apr 2021 15:46:03 +0200

Available diffs

• diff from 2.4.0+dfsg-1 (in Debian) to 2.4.0+dfsg-1ubuntu1 (551 bytes)

pymol (2.4.0+dfsg-1) unstable; urgency=medium

  * New upstream release.
  * debian/patches/02_test-suite.patch: Refreshed.
  * debian/patches/22_fix_pymol_import.patch: Likewise.
  * debian/patches/27_fix_pymol_path_in_setup.patch: Likewise.
  * debian/patches/31_fix_format-security.patch: Likewise.
  * debian/patches/33_fix_relative_paths_in_example_scripts.patch: Likewise.
  * debian/patches/40_mstop_movies.patch: Likewise.
  * debian/patches/28_no_data_install_in_python_path.patch: Updated.
  * debian/patches/32_fix_spelling_lintian_warnings.patch: Likewise.
  * debian/patches/60_py3_test.patch: Removed, no longer needed.
  * debian/control (Build-Depends): Added libnetcdf-dev
  * debian/pymol-data.install: Remove scripts directory, no longer present
    upstream.

 -- Michael Banck <email address hidden>  Sun, 10 Jan 2021 21:46:57 +0100

Available diffs

• diff from 2.3.0+dfsg-1build2 (in Ubuntu) to 2.4.0+dfsg-1 (766.6 KiB)

pymol (2.3.0+dfsg-1build2) hirsute; urgency=medium

  * No-change rebuild to build with python3.9 as supported.

 -- Matthias Klose <email address hidden>  Mon, 26 Oct 2020 14:02:27 +0100

Available diffs

• diff from 2.3.0+dfsg-1build1 to 2.3.0+dfsg-1build2 (328 bytes)

pymol (2.3.0+dfsg-1build1) focal; urgency=medium

  * No-change rebuild to drop python3.7.

 -- Matthias Klose <email address hidden>  Tue, 18 Feb 2020 09:38:36 +0100

Available diffs

• diff from 2.3.0+dfsg-1 (in Debian) to 2.3.0+dfsg-1build1 (317 bytes)

pymol (2.2.0+dfsg-4build1) focal; urgency=medium

  * No-change rebuild to build with python3.8.

 -- Matthias Klose <email address hidden>  Fri, 18 Oct 2019 18:42:19 +0000

Available diffs

• diff from 2.2.0+dfsg-4 (in Debian) to 2.2.0+dfsg-4build1 (315 bytes)

pymol (2.3.0+dfsg-1) unstable; urgency=medium

  * Team Upload.
  * New upstream release.
    - drop patches applied upstream.
    - refresh patches.
  * Stop building the Python 2 package python-pymol (Closes: #937481).
  * Port the test runner to Python 3.
  * Update to debhelper-compat (= 12).
  * Update Standards-Version to 4.4.0 (no changes required).
  * Mark autopkgtest tests as superficial since they don't test much at
    present.

 -- Stuart Prescott <email address hidden>  Tue, 17 Sep 2019 01:34:28 +1000

Available diffs

• diff from 2.2.0+dfsg-4build1 (in Ubuntu) to 2.3.0+dfsg-1 (181.7 KiB)

pymol (2.2.0+dfsg-4) unstable; urgency=medium

  * Team Upload.
  * Ensure that arch:all package can be built separately.
  * Switch the pymol binary package to be arch:all following the split
    of the python modules off to their own packages.

 -- Stuart Prescott <email address hidden>  Wed, 02 Jan 2019 12:15:06 +1100

Available diffs

• diff from 2.2.0+dfsg-1.1 to 2.2.0+dfsg-4 (5.5 KiB)
• diff from 2.2.0+dfsg-3 to 2.2.0+dfsg-4 (792 bytes)

pymol (2.2.0+dfsg-3) unstable; urgency=medium

  * Team Upload.
  * Upload Qt5 GUI to unstable for wider testing.
  * Merge changes from previous NMU 2.2.0+dfsg-1.1.
  * Update Standards-Version to 4.3.0 (no changes required).
  * Remove unneeded Suggests: python3-tk from pymol-data.
  * Fix up autopkgtest tests for Qt5 GUI.

 -- Stuart Prescott <email address hidden>  Mon, 31 Dec 2018 17:22:59 +1100

Available diffs

• diff from 2.2.0+dfsg-1.1 to 2.2.0+dfsg-3 (5.3 KiB)

pymol (2.2.0+dfsg-1.1) unstable; urgency=medium

  * Team upload
  * Fix for FTBFS with glew 2.1, needed for glew/hdf5 transitions.
    Closes: #915112

 -- Alastair McKinstry <email address hidden>  Fri, 07 Dec 2018 12:29:01 +0000

Available diffs

• diff from 2.2.0+dfsg-1 to 2.2.0+dfsg-1.1 (728 bytes)
• diff from 2.2.0+dfsg-1build1 (in Ubuntu) to 2.2.0+dfsg-1.1 (810 bytes)

pymol (2.2.0+dfsg-1build1) disco; urgency=medium

  * No-change reubild against latest glew

 -- Jeremy Bicha <email address hidden>  Fri, 23 Nov 2018 18:15:43 -0500

Available diffs

• diff from 2.2.0+dfsg-1 (in Debian) to 2.2.0+dfsg-1build1 (317 bytes)

pymol (2.2.0+dfsg-1) unstable; urgency=medium

  [ Stuart Prescott ]
  * Team upload.

  [ Michael Banck ]
  * New upstream release.
  * debian/watch: Update to github.
  * debian/patches/32_fix_spelling_lintian_warnings.patch: Refreshed.
  * debian/control (Build-Depends): Added libglm-dev.

 -- Stuart Prescott <email address hidden>  Fri, 02 Nov 2018 11:43:02 +1100

Available diffs

• diff from 2.1.0+dfsg-3 to 2.2.0+dfsg-1 (461.2 KiB)

pymol (2.1.0+dfsg-3) unstable; urgency=medium

  * Team upload.
  * Force use of Tk GUI to prevent crashes with Qt GUI (Closes: #902348).

 -- Stuart Prescott <email address hidden>  Fri, 29 Jun 2018 00:30:41 +1000

Available diffs

• diff from 2.1.0+dfsg-2 to 2.1.0+dfsg-3 (1.2 KiB)

pymol (2.1.0+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Fix tests so that they do not loop forever (Closes: #897191).
  * Whitespace cleanup of changelog to shut up lintian.
  * Don't run the tests at build time if nocheck is set.
  * Add symlink to examples in /usr/share/doc/pymol.
  * Update build system to pybuild and simplify d/rules.

 -- Stuart Prescott <email address hidden>  Thu, 03 May 2018 01:46:13 +1000

Available diffs

• diff from 1.8.4.0+dfsg-1build1 (in Ubuntu) to 2.1.0+dfsg-2 (472.0 KiB)

pymol (1.8.4.0+dfsg-1build1) zesty; urgency=medium

  * No-change rebuild against latest glew

 -- Jeremy Bicha <email address hidden>  Sun, 06 Nov 2016 14:53:56 -0500

Available diffs

• diff from 1.8.4.0+dfsg-1 (in Debian) to 1.8.4.0+dfsg-1build1 (318 bytes)

pymol (1.8.4.0+dfsg-1) unstable; urgency=medium

  * Team upload
  * New upstream version

 -- Andreas Tille <email address hidden>  Thu, 20 Oct 2016 17:33:21 +0200

Available diffs

• diff from 1.8.2.1+dfsg-1.2 to 1.8.4.0+dfsg-1 (109.6 KiB)

pymol (1.8.2.1+dfsg-1.2) unstable; urgency=medium

  * Non-maintainer upload.
  * Avoid bad installation of the data files into pymol binary
    (Closes: #836005)

 -- Gianfranco Costamagna <email address hidden>  Wed, 31 Aug 2016 15:28:27 +0200

Available diffs

• diff from 1.8.2.1+dfsg-1.1 to 1.8.2.1+dfsg-1.2 (545 bytes)

pymol (1.8.2.1+dfsg-1.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Fix FTBFS with dpkg-buildpackage -A (Closes: #835224)

 -- Gianfranco Costamagna <email address hidden>  Mon, 29 Aug 2016 10:47:59 +0200

Available diffs

• diff from 1.7.2.1-2.2build1 (in Ubuntu) to 1.8.2.1+dfsg-1.1 (2.6 MiB)

pymol (1.7.2.1-2.2build1) yakkety; urgency=medium

  * No-change rebuild for libpng soname change.

 -- Matthias Klose <email address hidden>  Sat, 23 Apr 2016 00:19:15 +0000

Available diffs

• diff from 1.7.2.1-2.2 (in Debian) to 1.7.2.1-2.2build1 (312 bytes)

pymol (1.7.2.1-2.2) unstable; urgency=medium

  * Non-maintainer upload.
  * Change libpng12-0-dev build-dependency to libpng-dev, to ease libpng
    transition. (Closes: #809840)

 -- Gianfranco Costamagna <email address hidden>  Fri, 22 Jan 2016 11:04:44 +0100

Available diffs

• diff from 1.7.2.1-2.1build1 (in Ubuntu) to 1.7.2.1-2.2 (692 bytes)

pymol (1.7.2.1-2.1build1) xenial; urgency=medium

  * No-change rebuild against libglew1.13

 -- Steve Langasek <email address hidden>  Wed, 11 Nov 2015 19:27:15 +0000

Available diffs

• diff from 1.7.2.1-2.1 (in Debian) to 1.7.2.1-2.1build1 (533 bytes)

pymol (1.7.2.1-2.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Build using dh-python. Closes: #786121.

 -- Matthias Klose <email address hidden>  Sat, 22 Aug 2015 10:02:58 +0200

Available diffs

• diff from 1.7.2.1-2 to 1.7.2.1-2.1 (490 bytes)

pymol (1.7.2.1-2) unstable; urgency=medium

  * debian/patches/21_fix_png_batch_mode.patch: Removed, broke functionality. 

 -- Michael Banck <email address hidden>  Sat, 13 Jun 2015 15:38:14 +0200

Available diffs

• diff from 1.7.2.1-1 to 1.7.2.1-2 (755 bytes)

pymol (1.7.2.1-1) unstable; urgency=low


  * New upstream point release.
  * debian/patches/31_fix_format-security.patch: New patch, fixes FTBFS bug
    with -Werror=format-security (closes: #759860).

 -- Michael Banck <email address hidden>  Sun, 14 Sep 2014 16:35:14 +0200

Available diffs

• diff from 1.7.1.3-1 to 1.7.2.1-1 (44.6 KiB)

pymol (1.7.1.3-1) unstable; urgency=low


  * New upstream point release.
  * debian/patches/30_pymol_data_path.patch: Removed: applied upstream.

 -- Michael Banck <email address hidden>  Wed, 21 May 2014 17:54:04 +0200

Available diffs

• diff from 1.7.0.0-1 to 1.7.1.3-1 (70.8 KiB)

pymol (1.7.0.0-1) unstable; urgency=low


  * New upstream release.
  * debian/patches/30_pymol_data_path.patch: New patch, uses PYMOL_DATA instead
    of PYMOL_PATH environment variable for data file location.

 -- Michael Banck <email address hidden>  Mon, 20 Jan 2014 17:43:21 +0100

Available diffs

• diff from 1.6.0.0-1.1build1 (in Ubuntu) to 1.7.0.0-1 (155.3 KiB)

pymol (1.6.0.0-1.1build1) trusty; urgency=medium

  * No change rebuild against glew 1.10.
 -- Dimitri John Ledkov <email address hidden>   Thu, 02 Jan 2014 13:10:24 +0000

Available diffs

• diff from 1.6.0.0-1.1 (in Debian) to 1.6.0.0-1.1build1 (555 bytes)

pymol (1.6.0.0-1.1) unstable; urgency=low


  * Non-maintainer upload.
  * debian/control: Remove the obsolete and unnecessary tk8.4-dev from build
    dependencies.

 -- Sergei Golovan <email address hidden>  Thu, 31 Oct 2013 11:53:43 +0400

Available diffs

• diff from 1.6.0.0-1 to 1.6.0.0-1.1 (521 bytes)

pymol (1.6.0.0-1) unstable; urgency=low


  * New upstream prelease.

  [ Michael Banck ]
  * debian/patches/11_fix__cmd_import.patch: Removed, no longer needed.
  * debian/patches/26_subversion_updates.patch: Likewise.
  * debian/pymol.install: Install data and scripts directories under
    /usr/share/pymol, as intended by upstream.
  * debian/pymol.launch.in: Updated for new data path location.
  * debian/patches/05_examples_data_path.patch: Removed, no longer needed.
  * debian/patches/09_chempy_data_path.patch: Likewise.
  * debian/patches/13_activate_vmd_plugin.patch: Likewise.
  * debian/patches/17_cmyk_png_data_path.patch: Likewise.
  * debian/patches/19_blosum_matrix_path.patch: Likewise.
  * debian/patches/20_output_license_terms.patch: Likewise.
  * debian/patches/25_ignore_setup_clean_errors.patch: Likewise.
  * debian/rules (override_dh_auto_clean): Do not abort on failure and remove
  * redundant call to setup.py.
  * debian/patches/22_fix_pymol_import.patch: Change the value of $PYMOL_PATH
    to the one found by find_module('pymol').
  * debian/patches/28_no_data_install_in_python_path.patch: New patch, skips
    installation of the data (and examples, test) directories into the pymol
    path.
  * debian/patches/29_fix_path_to_splash.patch: New patch, changes search path
    for splash image from $PYMOL_PATH to $PYMOL_DATA.
  * debian/patches/series: Disable 24_autodock_plugin.patch for now, as it does
    work currently.
  * debian/control (Standards-Version): Bumped to 3.9.4.

  [ Daniel Leidert ]
  * debian/control (Uploaders): Removed myself.
    (Depends): Added python-numpy (LP: #1076104).
    (Suggests): Added chemical-mime-data.
  * debian/gnome-pymol.desktop: Dropped unused file.
  * debian/pymol.desktop (MimeType, Exec): Additions (LP: #1087265).
  * debian/pymol.launch.in: Environmental path variables (LP: #925445).
  * debian/upstream: Minor additions.

 -- Debichem Team <email address hidden>  Thu, 08 Aug 2013 20:32:10 +0200

Available diffs

• diff from 1.5.0.1-2build1 (in Ubuntu) to 1.6.0.0-1 (941.3 KiB)

pymol (1.5.0.1-2build1) quantal; urgency=low

  * Rebuild for libglew1.8.
 -- Colin Watson <email address hidden>   Sun, 09 Sep 2012 20:59:43 +0100

Available diffs

• diff from 1.5.0.1-2 (in Debian) to 1.5.0.1-2build1 (348 bytes)

pymol (1.5.0.1-2) unstable; urgency=low


  * debian/patches/26_subversion_updates.patch: New patch, includes the fixes
    from subversion since 1.5.0.1 up to revision 3996.
  * debian/upstream: New file.
  * debian/pymolRef.tex: Updated with latest version from
    http://www.pymolwiki.org/index.php/CheatSheet.

 -- Michael Banck <email address hidden>  Wed, 02 May 2012 18:11:37 +0200

Available diffs

• diff from 1.4.1-3 (in Ubuntu) to 1.5.0.1-2 (556.3 KiB)

pymol (1.4.1-1ubuntu0.1) oneiric-proposed; urgency=low

  * Include shaders in the package. Avoids a segfault on startup, on machines
    with OpenGL 2.  (LP: #991117)
 -- Stefano Rivera <email address hidden>   Sun, 29 Apr 2012 16:51:52 +0200

Available diffs

• diff from 1.4.1-1 to 1.4.1-1ubuntu0.1 (477 bytes)

pymol (1.4.1-3) unstable; urgency=low

  * debian/control (Build-Depends): Dropped dpatch in favour of source
    format 3.0 (quilt).
  * debian/pymol.pyremove: Added. Remove web/*__init__.py to fix file conflict
    (closes: #650756).
  * debian/rules: Remove dpatch addon call. Disable verbose output.
    (override_dh_clean): Don't remove test/pymol-test; quilt will do.
  * debian/README.source: Dropped obsolete file.
  * debian/source/lintian-overrides: Ditto.
  * debian/patches/02_test-suite.dpatch: Renamed to
    debian/patches/02_test-suite.patch.
  * debian/patches/03_povray.dpatch: Renamed to
    debian/patches/03_povray.patch.
  * debian/patches/05_examples_data_path.dpatch: Renamed to
    debian/patches/05_examples_data_path.patch.
  * debian/patches/09_chempy_data_path.dpatch: Renamed to
    debian/patches/09_chempy_data_path.patch.
  * debian/patches/11_fix__cmd_import.dpatch: Renamed to
    debian/patches/11_fix__cmd_import.patch.
  * debian/patches/13_activate_vmd_plugin.dpatch: Renamed to
    debian/patches/13_activate_vmd_plugin.patch.
  * debian/patches/17_cmyk_png_data_path.dpatch: Renamed to
    debian/patches/17_cmyk_png_data_path.patch.
  * debian/patches/19_blosum_matrix_path.dpatch: Renamed to
    debian/patches/19_blosum_matrix_path.patch.
  * debian/patches/20_output_license_terms.dpatch: Renamed to
    debian/patches/20_output_license_terms.patch.
  * debian/patches/21_fix_png_batch_mode.dpatch: Renamed to
    debian/patches/21_fix_png_batch_mode.patch.
  * debian/patches/22_fix_pymol_import.dpatch: Renamed to
    debian/patches/22_fix_pymol_import.patch.
  * debian/patches/23_bts576210_FTBFS_ia64.dpatch: Renamed to
    debian/patches/23_bts576210_FTBFS_ia64.patch.
  * debian/patches/24_autodock_plugin.dpatch: Renamed to
    debian/patches/24_autodock_plugin.patch.
  * debian/patches/00list: Renamed to debian/patches/series and adjusted.

Available diffs

• diff from 1.4.1-1 to 1.4.1-3 (67.4 KiB)

pymol (1.4.1-1) unstable; urgency=low

  * New upstream release.

  [ Daniel Leidert ]
  * debian/watch: Adjusted to catch the re-introduced tarball download.

Available diffs

• diff from 1.3r2-1 to 1.4.1-1 (184.1 KiB)

pymol (1.3r2-1) unstable; urgency=low

  * New upstream release.
  * debian/patches/13_activate_vmd_plugin: Removed, no longer needed.
  * debian/patches/19_blosum_matrix_path.dpatch: Refreshed.
  * debian/patches/24_autodock_plugin.dpatch: New patch, includes the 
    autodock plugin from Daniel Seeliger.
  * debian/patches/00list: Adjusted.
  * debian/control (Standards-Version): Bumped to 3.9.1.
  * debian/control (Depends): Added ${misc:Depends}.
 -- Ubuntu Archive Auto-Sync <email address hidden>   Sat,  30 Apr 2011 13:33:51 +0000

Available diffs

• diff from 1.2r2-1.1build1 to 1.3r2-1 (487.3 KiB)

pymol (1.2r2-1.1build1) natty; urgency=low

  * Rebuild with python 2.7 as the python default.
 -- Matthias Klose <email address hidden>   Wed, 08 Dec 2010 15:08:59 +0000

Available diffs

• diff from 1.2r2-1.1 to 1.2r2-1.1build1 (295 bytes)

pymol (1.2r2-1.1) unstable; urgency=low

  * Non-maintainer upload.
  * debian/patches/23_bts576210_FTBFS_ia64.dpatch
    - fix a FTBFS on ia64, working aroung a bug in GCC; thanks to Jakub Wilk for
      the report and patch; Closes: #576210
 -- Ubuntu Archive Auto-Sync <email address hidden>   Thu,  13 May 2010 08:13:01 +0100

Available diffs

• diff from 1.2r2-1 to 1.2r2-1.1 (861 bytes)

pymol (1.2r2-1) unstable; urgency=low

  * New upstream release.  This upload is dedicated to the pymol founder and
    lead developer Warren DeLano, who passed away on November 3rd, 2009.

  [ Daniel Leidert (dale) ]
  * debian/patches/18_enable_gl_shaders.dpatch: Refreshed.

  [ Michael Banck ]
  * debian/patches/21_fix_png_batch_mode.dpatch: New patch, fixes PNG
    generation in batch mode, by Vincent Fourmond (closes: #560412).
  * debian/patches/22_fix_pymol_import.dpatch: New patch, fixes importing of
    pymol module from python (closes: #556878).
 -- Ubuntu Archive Auto-Sync <email address hidden>   Sun,  09 May 2010 14:00:28 +0100

Available diffs

• diff from 1.2r1-3 to 1.2r2-1 (24.9 KiB)

pymol (1.2r1-3) unstable; urgency=low

  * debian/pymol.launch.in: Don't execute the package (closes: #550721).
    Otherwise package execution fails with python 2.6 and 3.
 -- Bhavani Shankar <email address hidden>   Mon,  21 Dec 2009 18:38:39 +0000

Available diffs

• diff from 1.2r1-2ubuntu1 to 1.2r1-3 (693 bytes)

pymol (1.2r1-2ubuntu1) karmic; urgency=low

  * Synced with Debian (LP: #448594)
  * debian/pymol.launch.in: changed pymol to pymol.__init__i to be able to run
    the application (see http://bugs.python.org/issue4195)

 -- Scott Howard <email address hidden>   Sun, 11 Oct 2009 23:45:07 -0400

Available diffs

• diff from 1.1-1ubuntu2 to 1.2r1-2ubuntu1 (8.7 MiB)

pymol (1.1-1ubuntu2) jaunty; urgency=low

  * Fix complaints when installing, "as" can no longer be used
    as a variable name (LP: #340085). The consequence is that
    the "as" keyword has become "show_as" (changed as proposed
    by upstream).

 -- Morten Kjeldgaard <email address hidden>   Wed, 15 Apr 2009 14:24:39 +0200

Available diffs

• diff from 1.1-1ubuntu1 to 1.1-1ubuntu2 (1.2 KiB)

pymol (1.1-1ubuntu1) jaunty; urgency=low

  * Python 2.6 transition (lp: #336493).

 -- Michael Bienia <email address hidden>   Mon, 02 Mar 2009 16:08:12 +0100

Available diffs

• diff from 1.1-1 to 1.1-1ubuntu1 (791 bytes)

pymol (1.1-1) unstable; urgency=low

  * New upstream release.

  [ Daniel Leidert (dale) ]
  * debian/control (Uploaders): Added myself.
  * debian/pymol.1: Added basic man-page for pymol (closes: #148399).
  * debian/rules (binary-arch): Install man-page for pymol.
  * debian/patches/11_fix__cmd_import.dpatch: Added a short description based
    on the changelog entry to satisfy lintian.

  [ Michael Banck ]
  * debian/patches/17_cmyk_png_data_path.dpatch: Fix the location lookup for
    cmyk.png; closes: #490067.
  * debian/pymolRef.tex: New file, taken from pymol community wiki
    http://www.pymolwiki.org.
  * debian/copyright: Add GPLv2 notice for debian/pymolRef.tex.
  * debian/control (Build-Depends): Added texlive-latex-base.
  * debian/rules (build): Run pdflatex to create reference card from
    debian/pymolRef.tex.
  * (install): Copy it to $(BUILD_DIR)/usr/share/doc/pymol/pymol-ref-card.pdf.
  * (clean): Remove pdflatex created files.
  * debian/patches/12_align_matrix.dpatch: Removed, applied upstream.
  * debian/patches/15_fix_scripting_mode.dpatch: Likewise.
  * debian/patches/13_activate_vmd_plugin.dpatch: Refreshed.
  * debian/rules (install): Create $(BUILD_DIR)/usr/share/doc/pymol.
  * debian/control (Description): Updated.
  * debian/README.Debian: Removed entry from 19 May 2002.

 -- Ubuntu Archive Auto-Sync <email address hidden>   Wed,  05 Nov 2008 10:46:49 +0000

Available diffs

• diff from 1.1~beta3-3 to 1.1-1 (310.4 KiB)

pymol (1.1~beta3-3) unstable; urgency=low

  [ LI Daobing ]
  * debian/pymol.desktop: fix lintian info
    desktop-entry-contains-encoding-key.

  [ Michael Banck ]
  * debian/control (Build-Depends): Added g++-4.2 on arm, armel.
  * debian/rules: Use g++-4.2 on arm, armel; by Adeodato Simo; 
    closes: #478034.

pymol (1.0r2-1) unstable; urgency=low

  * New upstream release.

  [ Daniel Leidert ]
  * debian/control: Added Homepage and XS-Vcs-* fields. Added get-orig-source
    target to retrieve source from SVN.
    (Build-Depends): Raised debhelper compat level.
  * debian/pymol.menu (section): Menu section transition.
  * debian/rules: DH_COMPAT is obsolete. Better use debian/compat. Raised
    level to debhelper 5.
  * debian/watch: Fixed. Upstream doesn't provide tarballs anymore, so we
    check their SVN.

  [ Michael Banck ]
  * debian/patches/13_activate_vmd_plugin.dpatch: Build the VMD plugin,
    by Martin Hoefling.
  * debian/control (Maintainer): Change to Debichem Team.

 -- Ubuntu Archive Auto-Sync <email address hidden>   Wed,  24 Oct 2007 07:28:04 +0100

pymol (1.0-1) unstable; urgency=low

  * New upstream release.

  [ Daniel Leidert ]
  * debian/watch: Added.

  [ LI Daobing ]
  * debian/rules: lintian doesn't like "-$(MAKE) clean", see bug#325372

  [ Michael Banck ]
  * debian/README.Debian: Remove link to obsolete manual and mention
    http://www.pymolwiki.org/ as documenation source.
  * debian/rules (dh_installchangelogs): CHANGES got renamed to ChangeLog.
  * debian/rules (dh_installdocs): Include AUTHORS.
  * debian/patches/05_examples_data_path.dpatch: Updated.
  * debian/pymol.launch.in: Remove quotes around $*; closes: #409188.
  * debian/rules (clean): Don't fail if Makefile is not present.
  * debian/patches/12_align_matrix.dpatch: New patch to fix patch for
    align command.  Based on a patch by Charles Plessy and further input
    by Thomas Gaillard; closes: #385550.

 -- William Grant <email address hidden>   Wed,  11 Jul 2007 13:29:10 +0100

pymol (0.98+0.99rc8-1ubuntu1) gutsy; urgency=low

  * Merge from Debian unstable. Remaining Ubuntu changes:
    - Look for matrices in the right place when fitting.
    - Remove quotes from around pymol arguments.
  * Modify Maintainer value to match Debian-Maintainer-Field Spec

pymol (0.98+0.99rc6-2ubuntu2) feisty; urgency=low

  * Remove quotes from around pymol arguments. (LP: #92823)

 -- William Grant <email address hidden>   Fri, 23 Mar 2007 11:31:58 +1100

pymol (0.98+0.99rc6-2ubuntu1) feisty; urgency=low

  * Look for matrices in the right place when fitting (LP: #71045)
  * Replace Maintainer field.

 -- William Grant <email address hidden>   Fri, 16 Mar 2007 09:59:55 +1100

pymol (0.98+0.99rc6-2build1) feisty; urgency=low

  * Rebuild for python2.5 as the default python version.

 -- Matthias Klose <email address hidden>   Fri, 12 Jan 2007 13:20:53 +0000

pymol (0.98+0.99rc6-2) unstable; urgency=low

  * debian/control (Recommends): Added apbs.
  * Sync with Ubuntu; closes: #379508, #378825.
  * Acknowledge NMU; closes: #380910.

pymol (0.98+0.99rc6-1ubuntu1) edgy; urgency=low

  * Re-merge with Debian

 -- Barry deFreese <email address hidden>   Sun, 23 Jul 2006 17:39:15 -0400

pymol (0.98-1ubuntu2) dapper; urgency=low

  * Merged existing desktop files and updated to current freedestkop
    standards. Closes Ubuntu #36435

 -- Zygmunt Krynicki <email address hidden>   Sat, 25 Mar 2006 01:22:38 +0100

pymol (0.98-1ubuntu1) breezy; urgency=low


  * Resynchronise with Debian.
  * Sponsored for Barry DeFreese (Closes: Ubuntu #12487)

 -- Stephan Hermann <email address hidden>  Sun, 24 Jul 2005 11:43:59 +0200

pymol (0.97-1) unstable; urgency=low


  * New upstream release.
  * debian/patches/10_png_includes: Dropped, included upstream.
  * debian/patches/00list (10_png_includes.dpatch): Removed.
  * debian/control (Build-Depends): Added python; closes: #261040.
  * debian/pymol.launch (PYMOL_PATH): New environment variable to work
    around upstream breakage for the time being.

 -- Michael Banck <email address hidden>  Fri,  6 Aug 2004 03:02:32 +0200

pymol (0.97-1ubuntu1) hoary; urgency=low


  * Build using python2.4.

 -- Matthias Klose <email address hidden>  Sun,  3 Apr 2005 16:54:26 +0200

pymol (0.95-1) unstable; urgency=low


  * New upstream release.
  * (layer0/MyPNG.c): Reorder #includes in MyPNG.c.
    (10_png_includes.dpatch)
  * debian/patches/00list (10_png_includes.dpatch): Added.
  * debian/control (Build-Depends): Drop gcc-2.95 again, #229080 does
    not show up anymore with th current gcc.
  * debian/rules (CC): Removed.

 -- Michael Banck <email address hidden>  Wed,  7 Apr 2004 21:34:02 +0200