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python-biom-format package

python-biom-format 2.1.12-3ubuntu1 source package in Ubuntu

Changelog

python-biom-format (2.1.12-3ubuntu1) noble; urgency=medium

  * Cherry-pick upstream commit for compatibility with Python 3.12

 -- Graham Inggs <email address hidden>  Sun, 19 Nov 2023 19:35:24 +0000

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Uploaded by:
Graham Inggs
Uploaded to:
Noble
Original maintainer:
Ubuntu Developers
Architectures:
any all
Section:
python
Urgency:
Medium Urgency

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python-biom-format_2.1.12.orig.tar.xz 8.2 MiB 071dba4520bbf795ef23a1817ff71a799025178402eaf09fbb39349e3560b582
python-biom-format_2.1.12-3ubuntu1.debian.tar.xz 11.5 KiB b18cb659c330aa72db0aee9520eb3262c2b76abf2acb6bf19def3573af7b7c93
python-biom-format_2.1.12-3ubuntu1.dsc 2.5 KiB 232e109d5e4bf1ec5c68c10d268da359474ac121a3cedbfcec1aeb1d0662ecf1

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Binary packages built by this source

python-biom-format-doc: documentation for BIOM format

 The BIOM file format (canonically pronounced biome) is designed to be a
 general-use format for representing biological sample by observation
 contingency tables. BIOM is a recognized standard for the Earth
 Microbiome Project and is a Genomics Standards Consortium candidate
 project.
 .
 The BIOM format is designed for general use in broad areas of
 comparative -omics. For example, in marker-gene surveys, the primary use
 of this format is to represent OTU tables: the observations in this case
 are OTUs and the matrix contains counts corresponding to the number of
 times each OTU is observed in each sample. With respect to metagenome
 data, this format would be used to represent metagenome tables: the
 observations in this case might correspond to SEED subsystems, and the
 matrix would contain counts corresponding to the number of times each
 subsystem is observed in each metagenome. Similarly, with respect to
 genome data, this format may be used to represent a set of genomes: the
 observations in this case again might correspond to SEED subsystems, and
 the counts would correspond to the number of times each subsystem is
 observed in each genome.
 .
 This package provides the documentation for the BIOM format Python package.

python3-biom-format: Biological Observation Matrix (BIOM) format (Python 3)

 The BIOM file format (canonically pronounced biome) is designed to be a
 general-use format for representing biological sample by observation
 contingency tables. BIOM is a recognized standard for the Earth
 Microbiome Project and is a Genomics Standards Consortium candidate
 project.
 .
 The BIOM format is designed for general use in broad areas of
 comparative -omics. For example, in marker-gene surveys, the primary use
 of this format is to represent OTU tables: the observations in this case
 are OTUs and the matrix contains counts corresponding to the number of
 times each OTU is observed in each sample. With respect to metagenome
 data, this format would be used to represent metagenome tables: the
 observations in this case might correspond to SEED subsystems, and the
 matrix would contain counts corresponding to the number of times each
 subsystem is observed in each metagenome. Similarly, with respect to
 genome data, this format may be used to represent a set of genomes: the
 observations in this case again might correspond to SEED subsystems, and
 the counts would correspond to the number of times each subsystem is
 observed in each genome.
 .
 This package provides the BIOM format library for the Python 3 interpreter.

python3-biom-format-dbgsym: debug symbols for python3-biom-format