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python-biom-format package

python-biom-format 2.1.15.2-3 source package in Ubuntu

Changelog

python-biom-format (2.1.15.2-3) unstable; urgency=medium

  * Team Upload.
  * Pull upstream patch to fix FTBFS (Closes: #1044074)

 -- Nilesh Patra <email address hidden>  Mon, 05 Feb 2024 00:46:33 +0530

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
python
Urgency:
Medium Urgency

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python-biom-format_2.1.15.2-3.dsc 1.8 KiB 5e6907fc6904bc6d3762913019eb735927690be5f47564513153e0f81cdab19d
python-biom-format_2.1.15.2.orig.tar.gz 11.3 MiB b4b710d70ab3365966d7fe5104eea73c3c927fe46de2be924aa82531432761e7
python-biom-format_2.1.15.2-3.debian.tar.xz 11.2 KiB 62b746fe97775a55d91caadcf20d4c60c304e816e843bda75c025caf923eeaab

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Binary packages built by this source

python-biom-format-doc: documentation for BIOM format

 The BIOM file format (canonically pronounced biome) is designed to be a
 general-use format for representing biological sample by observation
 contingency tables. BIOM is a recognized standard for the Earth
 Microbiome Project and is a Genomics Standards Consortium candidate
 project.
 .
 The BIOM format is designed for general use in broad areas of
 comparative -omics. For example, in marker-gene surveys, the primary use
 of this format is to represent OTU tables: the observations in this case
 are OTUs and the matrix contains counts corresponding to the number of
 times each OTU is observed in each sample. With respect to metagenome
 data, this format would be used to represent metagenome tables: the
 observations in this case might correspond to SEED subsystems, and the
 matrix would contain counts corresponding to the number of times each
 subsystem is observed in each metagenome. Similarly, with respect to
 genome data, this format may be used to represent a set of genomes: the
 observations in this case again might correspond to SEED subsystems, and
 the counts would correspond to the number of times each subsystem is
 observed in each genome.
 .
 This package provides the documentation for the BIOM format Python package.

python3-biom-format: Biological Observation Matrix (BIOM) format (Python 3)

 The BIOM file format (canonically pronounced biome) is designed to be a
 general-use format for representing biological sample by observation
 contingency tables. BIOM is a recognized standard for the Earth
 Microbiome Project and is a Genomics Standards Consortium candidate
 project.
 .
 The BIOM format is designed for general use in broad areas of
 comparative -omics. For example, in marker-gene surveys, the primary use
 of this format is to represent OTU tables: the observations in this case
 are OTUs and the matrix contains counts corresponding to the number of
 times each OTU is observed in each sample. With respect to metagenome
 data, this format would be used to represent metagenome tables: the
 observations in this case might correspond to SEED subsystems, and the
 matrix would contain counts corresponding to the number of times each
 subsystem is observed in each metagenome. Similarly, with respect to
 genome data, this format may be used to represent a set of genomes: the
 observations in this case again might correspond to SEED subsystems, and
 the counts would correspond to the number of times each subsystem is
 observed in each genome.
 .
 This package provides the BIOM format library for the Python 3 interpreter.

python3-biom-format-dbgsym: debug symbols for python3-biom-format