python-biom-format 2.1.7+dfsg-5ubuntu1 source package in Ubuntu
Changelog
python-biom-format (2.1.7+dfsg-5ubuntu1) focal; urgency=low
* Merge from Debian unstable. Remaining changes:
- Add python3-h5py to the test deps.
- Disable the autopkgtest-pkg-python test.
* Dropped changes, included in Debian:
- Drop python2 support.
python-biom-format (2.1.7+dfsg-5) unstable; urgency=medium
* Set upstream metadata fields: Bug-Database, Repository, Repository-
Browse.
* Fix Build time test
Closes: #943622
python-biom-format (2.1.7+dfsg-4) unstable; urgency=medium
[ Steve Langasek ]
* Drop Python2 package
Closes: #934864, #937605
[ Andreas Tille ]
* Fix doc-base control file
* Standards-Version: 4.4.1
* Set upstream metadata fields: Repository.
-- Steve Langasek <email address hidden> Wed, 08 Jan 2020 22:53:28 -0800
Upload details
- Uploaded by:
- Steve Langasek
- Uploaded to:
- Focal
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any-amd64 any-arm64 any-i386 any-mips64el any-ppc64el armel armhf mipsel all
- Section:
- python
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| python-biom-format_2.1.7+dfsg.orig.tar.xz | 8.1 MiB | a1f46bd121f05b3d55811cbe2594ed446ff3de05debce295169187dd09ec55e5 |
| python-biom-format_2.1.7+dfsg-5ubuntu1.debian.tar.xz | 9.2 KiB | 312ea426bfa5113e2e9c15ca553b947f67906e69cad1f1370ec75e50ab453ff6 |
| python-biom-format_2.1.7+dfsg-5ubuntu1.dsc | 2.6 KiB | 81c1836cdc785ed1ff88a7ba55c20d1fe5a14862716307ef9ddd7f10a43601d2 |
Available diffs
Binary packages built by this source
- python-biom-format-doc: documentation for BIOM format
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
.
This package provides the documentation for the BIOM format Python package.
- python3-biom-format: Biological Observation Matrix (BIOM) format (Python 3)
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
.
This package provides the BIOM format library for the Python 3 interpreter.
- python3-biom-format-dbgsym: debug symbols for python3-biom-format
