Ubuntu
python-bx package

python-bx 0.11.0-2 source package in Ubuntu

Changelog

python-bx (0.11.0-2) unstable; urgency=medium

  * d/rules: use dh_numpy3 to inject a dependency on the appropriate
    numpy ABI.
  * mark the fix_BIN_OFFSETS_MAX patch as being forwarded upstream.
  * d/control: switch to pyproject based building.
  * d/patches/pytest8: add pytest 8.x compatability.
  * d/control: use pybuild-autopkgtest to provide non-superficial autopkgtests

 -- Michael R. Crusoe <email address hidden>  Tue, 27 Feb 2024 18:54:18 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

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Downloads

File Size SHA-256 Checksum
python-bx_0.11.0-2.dsc 2.2 KiB 1d324d9ae5ecb818c57f89b8831b93bb6906a0b97530396af0329c7fdf245453
python-bx_0.11.0.orig.tar.gz 1.6 MiB 0cfc82f756e0c0d76c050969609d3825706012e48a4010d1353de67acfff0c15
python-bx_0.11.0-2.debian.tar.xz 13.3 KiB bf2eadb94e3efb4c5d340f31fc61b44ce2a158ea03cbf0efc680609b01db7aac

Available diffs

No changes file available.

Binary packages built by this source

python3-bx: library to manage genomic data and its alignment

 The bx-python project is a Python3 library and associated set of scripts to
 allow for rapid implementation of genome scale analyses. The library contains
 a variety of useful modules, but the particular strengths are:
  * Classes for reading and working with genome-scale multiple local
    alignments (in MAF, AXT, and LAV formats)
  * Generic data structure for indexing on disk files that contain blocks of
    data associated with intervals on various sequences (used, for example, to
    provide random access to individual alignments in huge files; optimized
    for use over network filesystems)
  * Data structures for working with intervals on sequences
  * "Binned bitsets" which act just like chromosome sized bit arrays, but
    lazily allocate regions and allow large blocks of all set or all unset
    bits to be stored compactly
  * "Intersecter" for performing fast intersection tests that preserve both
    query and target intervals and associated annotation

python3-bx-dbgsym: debug symbols for python3-bx