Ubuntu
python-freecontact package

python-freecontact 1.1-4build1 source package in Ubuntu

Changelog

python-freecontact (1.1-4build1) focal; urgency=medium

  * No-change rebuild to build with python3.8.

 -- Matthias Klose <email address hidden>  Fri, 18 Oct 2019 18:10:31 +0000

Upload details

Uploaded by:
Matthias Klose
Uploaded to:
Focal
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
python-freecontact_1.1.orig.tar.gz 64.4 KiB 895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85
python-freecontact_1.1-4build1.debian.tar.xz 3.9 KiB fce695d02d2e8da54d69ac6a2f501646a27d495bb92a3dde9b21c0012bb83294
python-freecontact_1.1-4build1.dsc 2.3 KiB 0da06eb2f5d49cf343b097a3e0149f11c8dd58d2e5d45028bbee5af19e12bc91

Available diffs

View changes file

Binary packages built by this source

python-freecontact: No summary available for python-freecontact in ubuntu focal.

No description available for python-freecontact in ubuntu focal.

python-freecontact-dbgsym: No summary available for python-freecontact-dbgsym in ubuntu focal.

No description available for python-freecontact-dbgsym in ubuntu focal.

python3-freecontact: fast protein contact predictor - binding for Python3

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains the Python3 binding.

python3-freecontact-dbgsym: debug symbols for python3-freecontact