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python-freecontact package

python-freecontact 1.1-6 source package in Ubuntu

Changelog

python-freecontact (1.1-6) unstable; urgency=medium

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 -- Andreas Tille <email address hidden>  Fri, 21 Jan 2022 15:57:08 +0100

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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Downloads

File Size SHA-256 Checksum
python-freecontact_1.1-6.dsc 2.2 KiB bef97794f5375faab8582dcd65c658462b584f70aaf5d51f763d4ad0d0de708b
python-freecontact_1.1.orig.tar.gz 64.4 KiB 895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85
python-freecontact_1.1-6.debian.tar.xz 4.1 KiB 0a301a4f70fb9bb406e15dd697f8ca41399a7f7f3e00cc175aae3d9dbd98fe85

Available diffs

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Binary packages built by this source

python3-freecontact: fast protein contact predictor - binding for Python3

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains the Python3 binding.

python3-freecontact-dbgsym: debug symbols for python3-freecontact