python-freecontact 1.1-6build7 source package in Ubuntu
Changelog
python-freecontact (1.1-6build7) noble; urgency=high * No change rebuild against libfreecontact0t64. -- Julian Andres Klode <email address hidden> Fri, 22 Mar 2024 18:18:20 +0100
Upload details
- Uploaded by:
- Julian Andres Klode
- Uploaded to:
- Noble
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any
- Section:
- misc
- Urgency:
- Very Urgent
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
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python-freecontact_1.1.orig.tar.gz | 64.4 KiB | 895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85 |
python-freecontact_1.1-6build7.debian.tar.xz | 4.4 KiB | 1dc0938f17242aff4da2319283b10238088fea91d9bb8732d73d4c28711234f4 |
python-freecontact_1.1-6build7.dsc | 2.3 KiB | 29e7957e69b3e8f5ee31070f243242cb73be11cfd3edb8f4602d555f35353852 |
Available diffs
- diff from 1.1-6build6 to 1.1-6build7 (556 bytes)
Binary packages built by this source
- python3-freecontact: fast protein contact predictor - binding for Python3
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the Python3 binding.
- python3-freecontact-dbgsym: debug symbols for python3-freecontact