python-pairix 0.3.7-3build2 source package in Ubuntu
Changelog
python-pairix (0.3.7-3build2) jammy; urgency=medium * No-change rebuild to add python3.10. -- Matthias Klose <email address hidden> Sat, 16 Oct 2021 06:58:54 +0000
Upload details
- Uploaded by:
- Matthias Klose
- Uploaded to:
- Jammy
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| python-pairix_0.3.7.orig.tar.gz | 167.3 MiB | c0de5fb5baea2bf90a6179f9c81c911e2fb951b716b38574f73ac5b23ac84969 |
| python-pairix_0.3.7-3build2.debian.tar.xz | 3.3 KiB | de9fc8edddf104074058ff4c6a3746a20f982455747cbea95abaa59a1677e58f |
| python-pairix_0.3.7-3build2.dsc | 2.2 KiB | 4a90da9d796c94f5bf58f65f47dbb659b89910c10ecf53bd18ad464ab9566365 |
Available diffs
- diff from 0.3.7-3build1 to 0.3.7-3build2 (322 bytes)
Binary packages built by this source
- python3-pairix: 1D/2D indexing and querying with a pair of genomic coordinates
Pairix is a tool for indexing and querying on a block-compressed text
file containing pairs of genomic coordinates.
.
Pairix is a stand-alone C program that was written on top of tabix as a
tool for the 4DN-standard pairs file format describing Hi-C data:
pairs_format_ specification. md
.
However, Pairix can be used as a generic tool for indexing and querying
any bgzipped text file containing genomic coordinates, for either 2D- or
1D- indexing and querying.
.
For example: given the custom text file below, you want to extract
specific lines from the Pairs file further below. An awk command would
read the Pairs file from beginning to end. Pairix creates an index and
uses it to access the file from a relevant position by taking advantage
of bgzf compression, allowing for a fast query on large files.
- python3-pairix-dbgsym: debug symbols for python3-pairix
