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python-pairix package

python-pairix 0.3.7-6build2 source package in Ubuntu

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python-pairix (0.3.7-6build2) noble; urgency=medium

  * No-change rebuild with Python 3.12 as supported version

 -- Graham Inggs <email address hidden>  Tue, 31 Oct 2023 17:47:38 +0000

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Uploaded by:
Graham Inggs
Uploaded to:
Noble
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

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python-pairix_0.3.7.orig.tar.gz 167.3 MiB c0de5fb5baea2bf90a6179f9c81c911e2fb951b716b38574f73ac5b23ac84969
python-pairix_0.3.7-6build2.debian.tar.xz 4.8 KiB c4d021b8aa06a28d7c327ef1be2365e354ea0853349f34af3496f7e4777f55dc
python-pairix_0.3.7-6build2.dsc 2.2 KiB afe90ff842376a2f9a097d1e494710d7365a322ebf765bd12ed4a407d2e52e49

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Binary packages built by this source

python-pairix-examples: 1D/2D indexing and querying with a pair of genomic coordinates (examples)

 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.
 .
 This package contains some example data to test the package.

python3-pairix: 1D/2D indexing and querying with a pair of genomic coordinates

 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.

python3-pairix-dbgsym: debug symbols for python3-pairix