python-pyfaidx 0.6.4-1 source package in Ubuntu
Changelog
python-pyfaidx (0.6.4-1) unstable; urgency=medium
* Team Upload.
[ Andreas Tille ]
* Fix watchfile to detect new versions on github
* New upstream version
* Apply multi-arch hints.
+ python-pyfaidx-examples: Add Multi-Arch: foreign.
* Do not use setuptools-scm
* Build-Depends: python3-pytest, python3-pkg-resources;
Remove python3-nose from Build-Depends
* Simplify build time test
[ Nilesh Patra ]
* Add patch to fix FTBFS
* Add B-D on python3-biopython
* Revert "Update patches"
* Properly re-diff locale patch
* Add Depends on python3-biopython
* Add Depends on python3-biopython
* Update/fix autopkgtest
-- Nilesh Patra <email address hidden> Thu, 17 Feb 2022 22:40:38 +0530
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Jammy | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| python-pyfaidx_0.6.4-1.dsc | 2.4 KiB | 3ff137c55fd2fe7b33798e0080f770075fe52bbf2ced912f2c38a4bca874ac3a |
| python-pyfaidx_0.6.4.orig.tar.gz | 92.6 KiB | b74ec631f07678025e54ebe23c4071cb12eb5c7b62f08086bf3901378fd35651 |
| python-pyfaidx_0.6.4-1.debian.tar.xz | 6.1 KiB | 78f73ede76f9619d8b2d694fd93c8cb20622d3140721add788406961e4c3e01c |
Available diffs
- diff from 0.6.2-1 to 0.6.4-1 (20.7 KiB)
No changes file available.
Binary packages built by this source
- python-pyfaidx-examples: example data for efficient random access to fasta subsequences for Python
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
.
This package provides example data to test the Python modules.
- python3-pyfaidx: No summary available for python3-pyfaidx in ubuntu kinetic.
No description available for python3-pyfaidx in ubuntu kinetic.
